Pre_GI: BLASTP Hits

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Query: NC_008271:140846:140846 Rhodococcus sp. RHA1 plasmid pRHL3, complete sequence

Start: 140846, End: 141817, Length: 972

Host Lineage: Rhodococcus jostii; Rhodococcus; Nocardiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This strain was isolated from soil contaminated with gamma-hexachlorocyclohexane (lindane: a toxic insecticide) in Japan. Polychlorinated biphenyl degrading bacterium. Rhodococcus jostii is capable of degrading a wide variety of polychlorinated biphenyls (PCBs), which are toxic compounds produced by industry, and is studied extensively for this reason. This microbe is being examined thoroughly under different environmental conditions in order to better understand metabolic pathways and gene functions.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014811:166389:185636185636186622987Mycobacterium sp. Spyr1 plasmid pMSPYR101, complete sequenceDNA polymerase LigD-like ligase domain-containing protein6e-43174
NC_009142:2963831:297195929719592972738780Saccharopolyspora erythraea NRRL 2338, complete genomeATP-dependent DNA ligase4e-37155
NC_015416:2723189:274416427441642745111948Methanosaeta concilii GP-6 chromosome, complete genomeDNA polymerase LigD5e-32138
NC_019673:4687289:4694814469481446962921479Saccharothrix espanaensis DSM 44229 complete genomeputative DNA ligase7e-31134
NC_013169:2045000:2062906206290620655422637Kytococcus sedentarius DSM 20547, complete genomeDNA ligase D/DNA polymerase LigD8e-28124
NC_009485:8138314:8168179816817981692341056Bradyrhizobium sp. BTAi1 chromosome, complete genomeATP-dependent DNA ligase2e-27123
NC_014376:1472304:151207015120701512993924Clostridium saccharolyticum WM1 chromosome, complete genomeATP dependent DNA ligase4e-27122
NC_019903:2708500:2723797272379727262442448Desulfitobacterium dichloroeliminans LMG P-21439 chromosome,ATP-dependent DNA ligase LigD phosphoesterase module5e-27121
NC_010001:2125500:2128734212873421311752442Clostridium phytofermentans ISDg, complete genomeDNA ligase D2e-25116
NC_007722:851129:8511298511298536482520Erythrobacter litoralis HTCC2594, complete genomehypothetical protein2e-25116
NC_015573:997629:101154910115491012505957Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomeDNA polymerase LigD, ligase domain-containing protein2e-24113
NC_003413:1521080:1525737152573715274221686Pyrococcus furiosus DSM 3638, complete genomeDNA ligase2e-23109
NC_011899:355638:355638355638356495858Halothermothrix orenii H 168, complete genomeATP dependent DNA ligase2e-23109
NC_008536:8541267:855228485522848553252969Solibacter usitatus Ellin6076, complete genomeATP dependent DNA ligase2e-23109
NC_000868:500249:5140035140035156821680Pyrococcus abyssi GE5, complete genomeDNA ligase3e-23109
NC_013849:19404:1940419404210711668Ferroglobus placidus DSM 10642 chromosome, complete genomeDNA ligase I, ATP-dependent Dnl13e-23108
NC_009668:1726000:1741498174149817440022505Ochrobactrum anthropi ATCC 49188 chromosome 2, complete sequenceDNA ligase D5e-22105
NC_015138:3022414:3039612303961230424222811Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completeDNA ligase D3e-21102
NC_017955:3670670:3671121367112136721941074Modestobacter marinus, complete genomeATP-dependent DNA ligase3e-2099.4
NC_008705:868623:934078934078934722645Mycobacterium sp. KMS, complete genomeATP-dependent DNA ligase-like protein7e-2098.2
NC_015216:2422758:242601124260112426916906Methanobacterium sp. AL-21 chromosome, complete genomeATP dependent DNA ligase9e-2097.8
NC_008782:2683989:2685104268510426876172514Acidovorax sp. JS42, complete genomeDNA ligase (ATP)1e-1997.4
NC_017249:4398000:439968343996834400603921Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein3e-1995.9
NC_015136:2021799:2024715202471520266731959Burkholderia sp. CCGE1001 chromosome 1, complete sequenceDNA ligase D1e-1894
NC_014830:3870000:3891964389196438933641401Intrasporangium calvum DSM 43043 chromosome, complete genomeATP dependent DNA ligase2e-1893.6
NC_011529:1375920:1390140139014013918281689Thermococcus onnurineus NA1, complete genomethermostable DNA ligase2e-1893.6
NC_007508:2941889:2945662294566229482802619Xanthomonas campestris pv. vesicatoria str. 85-10, complete genomeATP-dependent DNA ligase2e-1893.6
NC_011071:10842:3104831048335252478Stenotrophomonas maltophilia R551-3, complete genomeDNA ligase D3e-1892.8
NC_008095:7499255:7517372751737275189671596Myxococcus xanthus DK 1622, complete genomeDNA ligase, ATP-dependent6e-1891.7
NC_016885:2091918:2091918209191820936721755Pyrobaculum oguniense TE7 chromosome, complete genomeDNA ligase I3e-1789.7
NC_016645:1909507:1928088192808819297791692Pyrobaculum sp. 1860 chromosome, complete genomeDNA ligase5e-1789
NC_013406:781308:791049791049791915867Paenibacillus sp. Y412MC10 chromosome, complete genomeATP-dependent DNA ligase2e-1687
NC_014148:4037357:4055204405520440569581755Planctomyces limnophilus DSM 3776 chromosome, complete genomeATP dependent DNA ligase2e-1687
NC_000917:532500:5600425600425617121671Archaeoglobus fulgidus DSM 4304, complete genomeDNA ligase (lig)2e-1686.7
NC_019977:1649546:1671185167118516728701686Methanomethylovorans hollandica DSM 15978, complete genomeATP-dependent DNA ligase I2e-1686.7
NC_007513:987969:1005424100542410070881665Synechococcus sp. CC9902, complete genomeDNA ligase3e-1686.3
NC_015320:470988:5005855005855022551671Archaeoglobus veneficus SNP6 chromosome, complete genomeDNA ligase5e-1685.5
NC_011881:1:6008600870421035Arthrobacter chlorophenolicus A6 plasmid pACHL02, completeATP dependent DNA ligase2e-1583.2
NC_008699:2418722:242176224217622422718957Nocardioides sp. JS614, complete genomeATP dependent DNA ligase7e-1581.6
NC_009142:2692693:271027127102712710906636Saccharopolyspora erythraea NRRL 2338, complete genomeATP-dependent DNA ligase5e-1479
NC_015723:1998363:1996693199669319983661674Cupriavidus necator N-1 chromosome 2, complete sequenceDNA ligase Lig2e-1377
NC_017954:1:24924920511803Thermogladius cellulolyticus 1633 chromosome, complete genomeATP-dependent DNA ligase3e-1376.3
NC_009440:79263:1211851211851229811797Metallosphaera sedula DSM 5348 chromosome, complete genomeATP-dependent DNA ligase6e-1375.1
NC_009464:300422:3044383044383061441707Uncultured methanogenic archaeon RC-I, complete genomeATP-dependent DNA ligase6e-1375.1
NC_008319:1306482:1315066131506613167631698Synechococcus sp. CC9311, complete genomepossible ATP-dependent DNA ligase8e-1374.7
NC_014820:1057826:1077557107755710792901734Cenarchaeum symbiosum A, complete genomeATP-dependent DNA ligase1e-1274.3
NC_009439:2427120:2427120242712024287781659Pseudomonas mendocina ymp, complete genomeATP-dependent DNA ligase1e-1274.3
NC_020389:1936000:1947325194732519490641740Methanosarcina mazei Tuc01, complete genomeATP-dependent DNA ligase2e-1273.6
NC_013729:2287884:229293722929372293821885Kribbella flavida DSM 17836, complete genome2e-1273.6
NC_014222:186876:2024822024822042751794Methanococcus voltae A3 chromosome, complete genomeDNA ligase I, ATP-dependent Dnl12e-1273.2
NC_017188:1172181:127192112719211272733813Bacillus amyloliquefaciens TA208 chromosome, complete genomeATP-dependent DNA ligase3e-1272.8
NC_017190:2130651:218728421872842188096813Bacillus amyloliquefaciens LL3 chromosome, complete genomeSPBc2 prophage-derived DNA ligase-like protein ligB3e-1272.8
NC_017191:1173989:127349812734981274310813Bacillus amyloliquefaciens XH7 chromosome, complete genomehypothetical protein3e-1272.8
NC_000964:2146000:219156621915662192378813Bacillus subtilis subsp. subtilis str. 168, complete genomeDNA ligase3e-1169.7
NC_005877:665092:6908376908376926091773Picrophilus torridus DSM 9790, complete genomeDNA ligase5e-1168.6
NC_009952:2752500:2754445275444527560491605Dinoroseobacter shibae DFL 12, complete genomeDNA ligase9e-1167.8
NC_014923:79370:7937079370809711602Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, completeATP dependent DNA ligase8e-1064.7
NC_006361:5546232:5549367554936755509381572Nocardia farcinica IFM 10152, complete genomeDNA ligase1e-0964.3
NC_013131:1593840:1622309162230916238921584Catenulispora acidiphila DSM 44928, complete genomeDNA ligase I, ATP-dependent Dnl11e-0964.3
NC_006322:1507411:150947515094751510284810Bacillus licheniformis ATCC 14580, complete genomeDNA ligase5e-0962.4
NC_005244:37546:532135321354172960Pseudomonas sp. ND6 plasmid pND6-1, complete sequenceATP-dependent DNA ligase8e-0961.2
NC_009515:616432:6257866257866274411656Methanobrevibacter smithii ATCC 35061, complete genomeATP-dependent DNA ligase, Cdc91e-0860.8
NC_004463:5722468:573615357361535736785633Bradyrhizobium japonicum USDA 110, complete genomesimilar to DNA ligase1e-0860.8
NC_004463:8401060:845029484502948450881588Bradyrhizobium japonicum USDA 110, complete genomesimilar to DNA ligase2e-0860.5
NC_014374:1072218:1177223117722311790461824Acidilobus saccharovorans 345-15 chromosome, complete genomeATP-dependent DNA ligase3e-0859.7
NC_014923:4017575:402602940260294026889861Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, completeATP dependent DNA ligase5e-0858.9
NC_003888:7659639:767133576713357672108774Streptomyces coelicolor A3(2), complete genomeDNA ligase1e-0757.8
NC_017249:2572000:257928825792882579716429Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein4e-0652.4
NC_004463:5110709:511634551163455116887543Bradyrhizobium japonicum USDA 110, complete genomesimilar to DNA ligase6e-0652