Pre_GI: BLASTP Hits

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Query: NC_008262:297960:310437 Clostridium perfringens SM101, complete genome

Start: 310437, End: 311595, Length: 1159

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This is a enterotoxin-producing food poisoning strain. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Known opportunistic toxin-producing pathogens in animals and humans. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. C. perfringens have been developed and the species became a model organism in clostridial genetic studies. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008262:2598920:2618118261811826191701053Clostridium perfringens SM101, complete genome2e-92339
NC_008262:381323:3823233823233833751053Clostridium perfringens SM101, complete genomeIS1470, transposase3e-81302
NC_008262:2649289:267090926709092671340432Clostridium perfringens SM101, complete genome2e-63243
NC_014721:729942:7464717464717488692399Caldicellulosiruptor kristjanssonii 177R1B chromosome, complete8e-28124
NC_014721:2135500:2185716218571621867971082Caldicellulosiruptor kristjanssonii 177R1B chromosome, complete1e-27124
NC_014721:2135500:2135505213550521365871083Caldicellulosiruptor kristjanssonii 177R1B chromosome, completeintegrase catalytic region2e-27123
NC_014721:11437:4066640666417481083Caldicellulosiruptor kristjanssonii 177R1B chromosome, completeintegrase catalytic region2e-27123
NC_014721:135982:1418521418521442512400Caldicellulosiruptor kristjanssonii 177R1B chromosome, complete2e-26120
NC_020134:1173000:1174298117429811753681071Clostridium stercorarium subsp. stercorarium DSM 8532, completetransposase for insertion-like sequence element IS11613e-24113
NC_020134:205000:2094132094132104831071Clostridium stercorarium subsp. stercorarium DSM 8532, completetransposase for insertion-like sequence element IS11613e-24113
NC_009012:3204696:3204696320469632057661071Clostridium thermocellum ATCC 27405, complete genomeIntegrase, catalytic region3e-24113
NC_010321:244371:2503022503022513451044Thermoanaerobacter pseudethanolicus ATCC 33223 chromosome, completeintegrase catalytic subunit7e-24111
NC_013921:1614397:1629322162932216303651044Thermoanaerobacter italicus Ab9 chromosome, complete genomeIntegrase catalytic region7e-24111
NC_010320:1949852:1966054196605419670971044Thermoanaerobacter sp. X514 chromosome, complete genomeintegrase catalytic subunit2e-23110
NC_014538:985339:9872479872479882901044Thermoanaerobacter sp. X513 chromosome, complete genomeIntegrase catalytic region2e-23110
NC_015958:2527376:2541519254151925425621044Thermoanaerobacter wiegelii Rt8.B1 chromosome, complete genomeintegrase catalytic subunit5e-23108
NC_008054:1502210:151280315128031513483681Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, complete2e-22107
NC_008529:1514000:1527553152755315285781026Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365, completeTransposase, IS30 family1e-21104
NC_008054:1502210:1516392151639215174411050Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, completeTransposase2e-21103
NC_014727:1136589:1156317115631711573511035Lactobacillus delbrueckii subsp. bulgaricus ND02 chromosome,transposase, is30 family6e-21102
NC_010674:1390473:139147713914771391674198Clostridium botulinum B str. Eklund 17B, complete genometransposase2e-20100
NC_014727:95875:1039931039931050421050Lactobacillus delbrueckii subsp. bulgaricus ND02 chromosome,transposase, is30 family1e-20100
NC_015385:1875671:1904199190419919052361038Treponema succinifaciens DSM 2489 chromosome, complete genomeIntegrase catalytic region3e-2099.8
NC_010080:1911932:1944241194424119453231083Lactobacillus helveticus DPC 4571, complete genometransposase8e-2098.6
NC_016048:3261166:3269334326933432703891056Oscillibacter valericigenes Sjm18-20, complete genomeputative transposase for insertion sequence element8e-2098.2
NC_008054:1194000:1200024120002412010581035Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, completeTransposase8e-1995.1
NC_009012:3204696:3205863320586332069751113Clostridium thermocellum ATCC 27405, complete genomeIntegrase, catalytic region3e-1583.2
NC_020134:1328302:133164613316461332338693Clostridium stercorarium subsp. stercorarium DSM 8532, completeintegrase catalytic region3e-1583.2
NC_015420:35384:353843538436205822Lactobacillus buchneri NRRL B-30929 plasmid pLBUC01, complete2e-1376.6
NC_008054:1649160:168572116857211686179459Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, complete5e-1375.5
NC_014727:1832144:183972318397231840580858Lactobacillus delbrueckii subsp. bulgaricus ND02 chromosome,transposase, is30 family7e-1375.1
NC_008054:1815723:182230018223001822860561Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, complete3e-1170.1
NC_008262:419726:436049436049436771723Clostridium perfringens SM101, complete genomeIS1470, transposase8e-1168.6
NC_012891:1949882:195345419534541953957504Streptococcus dysgalactiae subsp. equisimilis GGS_124 chromosome 1,transposase8e-1065.1
NC_002967:1804412:1804412180441218054881077Treponema denticola ATCC 35405, complete genomeISTde2, transposase2e-0963.9
NC_015602:1949610:1965961196596119669921032Lactobacillus kefiranofaciens ZW3 chromosome, complete genomeintegrase core domain-containing protein6e-0755.5
NC_018528:1932000:1937505193750519385391035Lactobacillus helveticus R0052 chromosome, complete genometransposase8e-0755.1
NC_006449:345396:350533350533351531999Streptococcus thermophilus CNRZ1066, complete genomeIS1239 transposase2e-0653.5
NC_020908:823589:8242518242518252731023Octadecabacter arcticus 238, complete genomeIS30 family transposase4e-0653.1
NC_016826:1783828:179804317980431798996954Streptococcus infantarius subsp. infantarius CJ18 chromosome,Transposase-like protein, IS30family6e-0652.4