Pre_GI: BLASTP Hits

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Query: NC_008262:2025699:2030616 Clostridium perfringens SM101, complete genome

Start: 2030616, End: 2031713, Length: 1098

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This is a enterotoxin-producing food poisoning strain. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Known opportunistic toxin-producing pathogens in animals and humans. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. C. perfringens have been developed and the species became a model organism in clostridial genetic studies. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010516:3368951:3368951336895133700271077Clostridium botulinum B1 str. Okra, complete genomeTPR domain protein7e-79294
NC_009617:1165539:1179374117937411804741101Clostridium beijerinckii NCIMB 8052 chromosome, complete genomehypothetical protein2e-78293
NC_008593:980731:9826869826869837651080Clostridium novyi NT, complete genomeTPR repeats containing protein5e-68258
NC_016012:879972:8941138941138951771065Candidatus Arthromitus sp. SFB-rat-Yit, complete genomeTPR repeat-containing protein2e-49196
NC_018664:985689:9904429904429915721131Clostridium acidurici 9a chromosome, complete genomeTPR repeat-containing protein8e-2098.2
NC_009922:1917271:1931206193120619323451140Alkaliphilus oremlandii OhILAs, complete genomeTetratricopeptide TPR_2 repeat protein2e-1790.1
NC_014614:1309203:1310989131098913121041116Clostridium sticklandii, complete genomehypothetical protein6e-1685.5
NC_009089:873295:8732958732958744371143Clostridium difficile 630, complete genomehypothetical protein4e-0962.8
NC_013171:1420135:1432864143286414339611098Anaerococcus prevotii DSM 20548, complete genomeTetratricopeptide TPR_2 repeat protein4e-0962.8
NC_017179:805867:8089098089098100511143Clostridium difficile BI1, complete genomehypothetical protein5e-0962.4
NC_013315:796313:7993557993558004971143Clostridium difficile CD196 chromosome, complete genomehypothetical protein5e-0962.4
NC_013316:796895:7968957968957980371143Clostridium difficile R20291, complete genomehypothetical protein5e-0962.4
NC_013665:1591081:163807216380721638899828Methanocella paludicola SANAE, complete genomehypothetical protein1e-0654.3