Pre_GI: BLASTP Hits

Some Help

Query: NC_008261:967973:970158 Clostridium perfringens ATCC 13124, complete genome

Start: 970158, End: 970961, Length: 804

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: The species type strain, originally isolated from a human gas gangrene patient. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Known opportunistic toxin-producing pathogens in animals and humans. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. C. perfringens have been developed and the species became a model organism in clostridial genetic studies. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010723:1379256:139888813988881399691804Clostridium botulinum E3 str. Alaska E43, complete genomePTS system sorbose-specific iic component2e-65249
NC_011660:2509362:251733925173392518145807Listeria monocytogenes HCC23 chromosome, complete genomePTS system fructose-specific transporter subunit IIC4e-51201
NC_015975:1936504:195133419513341952143810Lactobacillus ruminis ATCC 27782 chromosome, complete genomePTS family mannose/fructose/sorbose porter component IIC2e-49196
NC_014106:419511:451723451723452532810Lactobacillus crispatus ST1, complete genomePTS system, mannose-specific IIC component6e-47187
NC_014724:439594:476266476266477078813Lactobacillus amylovorus GRL 1112 chromosome, complete genomemannose-specific PTS system component IIC5e-47187
NC_015214:437733:475881475881476693813Lactobacillus acidophilus 30SC chromosome, complete genomePTS system mannose-specific transporter subunit IIC5e-47187
NC_005362:1870620:187723618772361878039804Lactobacillus johnsonii NCC 533, complete genomephosphoenolpyruvate-dependent sugar phosphotransferase system EIIC, probable mannose specific2e-46186
NC_018528:1681060:168828016882801689092813Lactobacillus helveticus R0052 chromosome, complete genomePTS system mannose-specific transporter subunit IIC2e-46186
NC_006814:403723:440509440509441330822Lactobacillus acidophilus NCFM, complete genomemannose-specific PTS system component IIC2e-46186
NC_008530:1775841:178103617810361781839804Lactobacillus gasseri ATCC 33323, complete genomemannose-specific PTS system component IIC3e-46185
NC_015602:1339067:134521013452101346019810Lactobacillus kefiranofaciens ZW3 chromosome, complete genomePTS system, mannose-specific IIC component8e-46184
NC_013504:1648551:165622716562271657030804Lactobacillus johnsonii FI9785 chromosome, complete genomephosphoenolpyruvate-dependent sugar phosphotransferase system EIIC, probably mannose specific9e-46183
NC_013192:469771:484469484469485275807Leptotrichia buccalis DSM 1135, complete genomephosphotransferase system PTS sorbose-specific IIC subunit9e-38157
NC_017047:3212000:321334632133463214143798Rahnella aquatilis HX2 chromosome, complete genomePTS system mannose-specific transporter subunit IIC5e-25114
NC_016818:3148000:314928031492803150077798Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completePTS system mannose/fructose/sorbose family transporter subunit IIC5e-25114
NC_015061:3147691:314874431487443149541798Rahnella sp. Y9602 chromosome, complete genomePTS system, mannose/fructose/sorbose family, IIC subunit5e-25114
NC_012880:2399205:240237424023742403171798Dickeya dadantii Ech703, complete genomePTS system, mannose/fructose/sorbose family, IIC subunit4e-24111
NC_013192:2434664:245282124528212453636816Leptotrichia buccalis DSM 1135, complete genomePTS system, mannose/fructose/sorbose family, IIC subunit1e-23110
NC_009617:4436837:445130444513044452095792Clostridium beijerinckii NCIMB 8052 chromosome, complete genomePTS system mannose/fructose/sorbose family transporter subunit IIC7e-23107
NC_013199:392450:411874411874412707834Lactobacillus rhamnosus Lc 705, complete genomePTS system, mannose-specific IIC component (ManY)2e-1996.7
NC_016612:2902628:292909729290972929897801Klebsiella oxytoca KCTC 1686 chromosome, complete genomePTS system mannose-specific transporter subunit IIC3e-1685.9