Pre_GI: BLASTP Hits

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Query: NC_008261:1787345:1801706 Clostridium perfringens ATCC 13124, complete genome

Start: 1801706, End: 1802890, Length: 1185

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: The species type strain, originally isolated from a human gas gangrene patient. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Known opportunistic toxin-producing pathogens in animals and humans. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. C. perfringens have been developed and the species became a model organism in clostridial genetic studies. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014624:2878457:2879916287991628813281413Eubacterium limosum KIST612 chromosome, complete genomephage major capsid protein3e-39162
NC_010674:950276:9578469578469589311086Clostridium botulinum B str. Eklund 17B, complete genomephage major capsid protein, HK97 family2e-27123
NC_012563:1704345:1706388170638817075631176Clostridium botulinum A2 str. Kyoto, complete genomephage major capsid protein, HK97 family8e-1788.6
NC_016791:1341858:1350301135030113514551155Clostridium sp. BNL1100 chromosome, complete genomephage major capsid protein, HK97 family3e-1686.7
NC_014479:1961692:1973512197351219747051194Bacillus subtilis subsp. spizizenii str. W23 chromosome, completephage major capsid protein (HK97 family)3e-1686.7
NC_006322:3418268:3447825344782534491081284Bacillus licheniformis ATCC 14580, complete genomehypothetical protein7e-1478.6
NC_006270:3418097:3447654344765434489371284Bacillus licheniformis ATCC 14580, complete genomehypothetical phagelike protein7e-1478.6
NC_015428:1544728:1569591156959115708321242Lactobacillus buchneri NRRL B-30929 chromosome, complete genomephage major capsid protein, HK97 family1e-1067.8
NC_002662:1042546:1056510105651010577031194Lactococcus lactis subsp. lactis Il1403, complete genomecapsid protein2e-1067.4
NC_009674:2678932:2693892269389226950671176Bacillus cytotoxicus NVH 391-98 chromosome, complete genomeHK97 family phage major capsid protein4e-1066.2
NC_013656:1549634:1565259156525915664881230Lactococcus lactis subsp. lactis KF147, complete genomephage major head protein1e-0964.7
NC_012984:1027898:1043899104389910452811383Lactobacillus plantarum JDM1, complete genomecapsid protein2e-0964.3
UCMB5137:120656:1363761363761376771302Bacillus atrophaeus UCMB-5137phage major capsid protein, HK97 family5e-0962.8
NC_007929:293709:3131723131723143681197Lactobacillus salivarius subsp. salivarius UCC118, complete genomeMajor head protein1e-0861.6
NC_014915:2963500:2984612298461229857181107Geobacillus sp. Y412MC52 chromosome, complete genomephage major capsid protein, HK97 family9e-0858.5
NC_013411:597235:6182176182176193231107Geobacillus sp. Y412MC61, complete genomephage major capsid protein, HK97 family9e-0858.5
NC_014551:865254:8872778872778884821206Bacillus amyloliquefaciens DSM 7, complete genomePhage major capsid protein1e-0758.2
NC_017190:852171:8713528713528725571206Bacillus amyloliquefaciens LL3 chromosome, complete genomephage major capsid protein1e-0758.2
NC_017190:871352:8713528713528725571206Bacillus amyloliquefaciens LL3 chromosome, complete genomephage major capsid protein1e-0758.2
NC_015519:2489728:2517046251704625182271182Tepidanaerobacter sp. Re1 chromosome, complete genomephage major capsid protein, HK97 family6e-0755.5
NC_013199:845000:8686348686348698361203Lactobacillus rhamnosus Lc 705, complete genomephage protein, major head protein3e-0653.5