Pre_GI: BLASTP Hits

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Query: NC_008261:1332864:1340322 Clostridium perfringens ATCC 13124, complete genome

Start: 1340322, End: 1340888, Length: 567

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: The species type strain, originally isolated from a human gas gangrene patient. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Known opportunistic toxin-producing pathogens in animals and humans. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. C. perfringens have been developed and the species became a model organism in clostridial genetic studies. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008262:1139500:114693411469341147500567Clostridium perfringens SM101, complete genomeglycerol dehydratase, beta subunit3e-85314
NC_003366:1122654:112945211294521130024573Clostridium perfringens str. 13, complete genomecoenzyme B12-dependent glycerol dehydrogenase medium subunit9e-85312
NC_010723:2082750:209402920940292094604576Clostridium botulinum E3 str. Alaska E43, complete genomepropanediol utilization: dehydratase, medium subunit2e-64245
NC_010674:2185704:219916421991642199739576Clostridium botulinum B str. Eklund 17B, complete genomepropanediol utilization: dehydratase, medium subunit1e-63242
NC_014632:1404000:141397914139791414542564Ilyobacter polytropus DSM 2926 chromosome, complete genomeglycerol dehydratase, cobalamin-dependent subunit beta9e-61232
NC_019970:2080419:209095120909512091607657Thermoanaerobacterium thermosaccharolyticum M0795, complete genomeDehydratase medium subunit5e-54210
NC_009648:3803622:384643638464363847020585Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeglycerol dehydratase3e-53207
NC_014633:442755:453864453864454517654Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequencedehydratase medium subunit8e-51199
NC_012488:1159463:116648111664811167140660Listeria monocytogenes Clip81459, complete genomediol dehydrase (diol dehydratase) gamma subunit9e-50196
NC_013517:1055854:111742611174261118100675Sebaldella termitidis ATCC 33386, complete genomedehydratase medium subunit5e-50196
NC_013766:1202713:120843412084341209093660Listeria monocytogenes 08-5578 chromosome, complete genomehypothetical protein1e-49195
NC_010320:1949852:196096919609691961658690Thermoanaerobacter sp. X514 chromosome, complete genomedehydratase, medium subunit4e-47187
NC_014538:985339:992686992686993375690Thermoanaerobacter sp. X513 chromosome, complete genomedehydratase medium subunit4e-47187
NC_017243:1813158:183021718302171830903687Brachyspira intermedia PWS/A chromosome, complete genomedehydratase medium subunit6e-47186
NC_014654:1113116:112032411203241120980657Halanaerobium sp. 'sapolanicus' chromosome, complete genomedehydratase medium subunit8e-39159
NC_008497:1575884:157642415764241577143720Lactobacillus brevis ATCC 367, complete genomeDiol Dehydratase medium subunit6e-38156