Pre_GI: BLASTP Hits

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Query: NC_008258:2190635:2208295 Shigella flexneri 5 str. 8401, complete genome

Start: 2208295, End: 2210139, Length: 1845

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. Shigella spp. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011741:2239637:2256015225601522598093795Escherichia coli IAI1 chromosome, complete genomeputative Molybdate metabolism regulator (molR)01179
CP002185:2347413:2365067236506723688613795Escherichia coli W, complete genome01179
CU928160:2239637:2256015225601522598093795Escherichia coli IAI1 chromosome, complete genomeputative Molybdate metabolism regulator (molR)01179
NC_010468:1694729:1694729169472916985233795Escherichia coli ATCC 8739, complete genomeWGR domain protein01174
NC_009800:2225182:2238823223882322426173795Escherichia coli HS, complete genomemolybdate metabolism regulator01171
NC_011745:2399313:2415694241569424194823789Escherichia coli ED1a chromosome, complete genomeputative Molybdate metabolism regulator (molR)01153
NC_011750:955451:9522129522129554813270Escherichia coli IAI39 chromosome, complete genome01095
NC_011353:2852362:2869933286993328728242892Escherichia coli O157:H7 str. EC4115 chromosome, complete genomehypothetical protein0634
NC_002655:2925787:2943353294335329462442892Escherichia coli O157:H7 EDL933, complete genomeputative regulator (fragment)0634
NC_011750:955451:9560249560249598303807Escherichia coli IAI39 chromosome, complete genomeputative molybdate metabolism protein1e-175617
NC_000913:2180855:2195432219543221973691938Escherichia coli K12, complete genome3e-169595
NC_000913:2180855:219734421973442198291948Escherichia coli K12, complete genome6e-165581
NC_012759:2069326:2090784209078420944163633Escherichia coli BW2952 chromosome, complete genomehypothetical protein7e-119428
AC_000091:2185369:2203613220361322072453633Escherichia coli W3110 DNA, complete genomehypothetical protein7e-119428
NC_000913:2180855:2198301219830122019333633Escherichia coli K12, complete genomehypothetical protein7e-119428
NC_010473:2267851:2289309228930922929413633Escherichia coli str. K-12 substr. DH10B, complete genomehypothetical protein7e-119428
CP002185:2347413:2368871236887123725033633Escherichia coli W, complete genomemolybdate metabolism regulator MolR-like protein9e-118424
NC_009800:2225182:2242627224262722462593633Escherichia coli HS, complete genomemolybdate metabolism regulator MolR homolog8e-118424
CU928160:2239637:2259819225981922634513633Escherichia coli IAI1 chromosome, complete genomeconserved hypothetical protein8e-118424
NC_011741:2239637:2259819225981922634513633Escherichia coli IAI1 chromosome, complete genomehypothetical protein8e-118424
NC_011745:2399313:2419492241949224231243633Escherichia coli ED1a chromosome, complete genomehypothetical protein1e-115417
NC_009617:3184924:3195386319538631988923507Clostridium beijerinckii NCIMB 8052 chromosome, complete genomemolybdate metabolism regulator8e-49195
NC_009617:3184924:3199775319977532031703396Clostridium beijerinckii NCIMB 8052 chromosome, complete genomehypothetical protein5e-48192
NC_014330:337546:3437453437453471373393Brachyspira pilosicoli 95/1000 chromosome, complete genomemolybdate metabolism regulator2e-32141
NC_012225:2274295:2274295227429522776213327Brachyspira hyodysenteriae WA1, complete genomehypothetical protein3e-25117
NC_012792:962292:9622929622929661193828Variovorax paradoxus S110 chromosome 2, complete genomePBS lyase HEAT domain protein repeat-containing protein7e-25115
NC_019908:1512622:1524409152440915275763168Brachyspira pilosicoli P43/6/78 chromosome, complete genomemolybdate metabolism regulator5e-1273.2
NC_014330:337546:3410623410623424531392Brachyspira pilosicoli 95/1000 chromosome, complete genomehypothetical protein2e-1068.6
NC_014815:1490957:1513386151338615160252640Micromonospora sp. L5 chromosome, complete genomehypothetical protein5e-0756.6
NC_007912:4396972:4408444440844444106632220Saccharophagus degradans 2-40, complete genomeregulatory protein, LuxR6e-0756.6
NC_014150:1099507:1109127110912711113912265Brachyspira murdochii DSM 12563 chromosome, complete genomelipoprotein2e-0655.1
NC_015161:354000:3616853616853646752991Deinococcus proteolyticus MRP chromosome, complete genomehypothetical protein2e-0655.1