Pre_GI: BLASTP Hits

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Query: NC_007953:504939:528575 Burkholderia xenovorans LB400 chromosome 3, complete sequence

Start: 528575, End: 529777, Length: 1203

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007908:1108494:1151700115170011528931194Rhodoferax ferrireducens T118, complete genomeextracellular ligand-binding receptor1e-121436
NC_010511:6067000:6110790611079061119801191Methylobacterium sp. 4-46 chromosome, complete genomebranched chain amino acid ABC transporter substrate-binding protein6e-120431
NC_015723:961909:9817559817559829961242Cupriavidus necator N-1 chromosome 2, complete sequenceABC transporter permease4e-116418
NC_010623:1961685:2016998201699820182271230Burkholderia phymatum STM815 chromosome 2, complete sequenceextracellular ligand-binding receptor1e-111403
NC_007336:66000:7432674326755551230Ralstonia eutropha JMP134 megaplasmid, complete sequenceExtracellular ligand-binding receptor6e-110397
NC_010511:4313769:4336960433696043381801221Methylobacterium sp. 4-46 chromosome, complete genomeextracellular ligand-binding receptor1e-102373
NC_007643:3799425:3802218380221838034321215Rhodospirillum rubrum ATCC 11170, complete genomeamide-urea binding protein1e-101370
NC_015422:1694363:1715960171596017171801221Alicycliphilus denitrificans K601 chromosome, complete genomeextracellular ligand-binding receptor1e-97357
NC_011894:7109374:7130915713091571321771263Methylobacterium nodulans ORS 2060, complete genomeExtracellular ligand-binding receptor4e-97355
NC_003047:3202125:3216094321609432172991206Sinorhizobium meliloti 1021, complete genomePUTATIVE PERIPLASMIC BINDING ABC TRANSPORTER PROTEIN6e-95347
NC_009434:3434381:3459741345974134607931053Pseudomonas stutzeri A1501, complete genomeABC transporter substrate-binding protein2e-93342
NC_017082:5925357:5928737592873759299661230Bradyrhizobium sp. S23321, complete genomeABC transporter substrate-binding protein5e-91335
NC_010511:6067000:6067154606715460683591206Methylobacterium sp. 4-46 chromosome, complete genomeputative ABC branched-chain amino transporter, periplasmic binding protein6e-88324
NC_017249:2109843:2127210212721021284181209Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein3e-75282
NC_010170:1219641:1241603124160312428051203Bordetella petrii, complete genomeputative Substrate-binding periplasmic protein6e-30132
NC_009720:464078:4676714676714690081338Xanthobacter autotrophicus Py2, complete genomeextracellular ligand-binding receptor1e-27124
NC_011894:7702000:772080677208067721309504Methylobacterium nodulans ORS 2060, complete genome2e-26120
NC_011892:306437:3064373064373076721236Methylobacterium nodulans ORS 2060 plasmid pMNOD01, completeExtracellular ligand-binding receptor2e-23110
NC_009937:5033152:5040446504044650416151170Azorhizobium caulinodans ORS 571, complete genomeputative substrate-binding protein1e-1584.7
NC_010170:4739925:4743625474362547448961272Bordetella petrii, complete genomeABC transporter substrate-binding protein1e-1584.7
NC_010511:637214:6536716536716549121242Methylobacterium sp. 4-46 chromosome, complete genomeextracellular ligand-binding receptor2e-1583.6
NC_015458:3077804:3097937309793730991391203Pusillimonas sp. T7-7 chromosome, complete genomeextracellular ligand-binding receptor4e-1582.8
NC_014974:1076565:1094174109417410953641191Thermus scotoductus SA-01 chromosome, complete genomeextracellular ligand-binding receptor1e-1481.3
NC_012587:3613162:3635526363552636367191194Rhizobium sp. NGR234, complete genomeputative extracellular ligand-binding receptor3e-1479.7
NC_015376:3631392:3634852363485236361381287Burkholderia gladioli BSR3 chromosome chromosome 2, completeExtracellular ligand-binding receptor3e-1479.7
NC_014834:2264108:2301627230162723029791353Rhodopseudomonas palustris DX-1 chromosome, complete genomeextracellular ligand-binding receptor4e-1376.3
NC_020453:3179346:3179346317934631805841239Agromonas oligotrophica S58 DNA, complete genomealiphatic amidase expression-regulating protein5e-1375.9
NC_012988:4292815:4316974431697443181311158Methylobacterium extorquens DM4, complete genomeextracellular ligand-binding receptor1e-1274.7
NC_011004:4073916:4114946411494641162981353Rhodopseudomonas palustris TIE-1, complete genomebranched-chain amino acid ABC transporter, periplasmic binding protein, putative3e-1273.2
NC_015723:1448000:1454414145441414555351122Cupriavidus necator N-1 chromosome 2, complete sequencehypothetical protein7e-1272
NC_015727:1294532:1319872131987213210951224Cupriavidus necator N-1 plasmid BB1p, complete sequenceABC transporter substrate-binding protein1e-1170.9
NC_016585:1004000:1019348101934810205441197Azospirillum lipoferum 4B plasmid AZO_p1, complete sequencebranched chain amino acid ABC transporter substrate-binding protein4e-1169.3
NC_012880:913698:9164499164499176931245Dickeya dadantii Ech703, complete genomeExtracellular ligand-binding receptor5e-1168.9
NC_008786:1507139:1526660152666015278381179Verminephrobacter eiseniae EF01-2, complete genomeExtracellular ligand-binding receptor1e-1068.2
NC_015724:129331:1474211474211486171197Cupriavidus necator N-1 plasmid BB2p, complete sequencebranched-chain amino acid ABC transport system permease protein1e-1068.2
NC_014831:2133060:2141827214182721430561230Thermaerobacter marianensis DSM 12885 chromosome, complete genomeamino acid/amide ABC transporter substrate-binding protein, HAAT family4e-1066.2
NC_016885:1153277:1177898117789811791841287Pyrobaculum oguniense TE7 chromosome, complete genomebranched-chain amino acid ABC transporter periplasmic protein8e-1065.1
NC_007953:504939:5136815136815149311251Burkholderia xenovorans LB400 chromosome 3, complete sequenceABC branched chain amino acid family transporter, periplasmic ligand binding protein1e-0964.7
NC_014641:20103:4203442034432091176Achromobacter xylosoxidans A8 plasmid pA81, complete sequenceextracellular ligand-binding receptor 61e-0964.7
NC_017249:908500:9461479461479473311185Bradyrhizobium japonicum USDA 6, complete genomeABC transporter substrate-binding protein3e-0963.5
NC_016147:3023180:3043998304399830451161119Pseudoxanthomonas spadix BD-a59 chromosome, complete genometwin-arginine translocation pathway signal1e-0861.6
NC_009437:2579161:2621677262167726229241248Caldicellulosiruptor saccharolyticus DSM 8903, complete genomeextracellular ligand-binding receptor5e-0859.3
NC_010505:4676403:4699711469971147008651155Methylobacterium radiotolerans JCM 2831, complete genomeExtracellular ligand-binding receptor5e-0859.3
NC_014391:4644500:4645341464534146466811341Micromonospora aurantiaca ATCC 27029 chromosome, complete genomeextracellular ligand-binding receptor2e-0757
NC_010475:420978:4209784209784222941317Synechococcus sp. PCC 7002, complete genomeABC transporter, branched-chain amino acid transport, periplasmic binding protein2e-0757
NC_013894:672840:6870666870666882801215Thermocrinis albus DSM 14484 chromosome, complete genomeurea ABC transporter, urea binding protein4e-0756.2
NC_010424:697187:7002417002417014191179Candidatus Desulforudis audaxviator MP104C, complete genomeExtracellular ligand-binding receptor7e-0755.5
NC_007908:1600244:1600244160024416015481305Rhodoferax ferrireducens T118, complete genomeputative transporter signal peptide protein8e-0755.5
NC_015684:1343251:1365489136548913667691281Oligotropha carboxidovorans OM5 chromosome, complete genomeABC transporter substrate-binding protein2e-0654.3
NC_012658:545840:5468995468995480411143Clostridium botulinum Ba4 str. 657 chromosome, complete genomeputative high-affinity branched-chain amino acid ABC transporter amino acid-binding protein1e-0654.3
NC_014828:2497462:2514413251441325156571245Ethanoligenens harbinense YUAN-3 chromosome, complete genomeABC transporter, periplasmic solute-binding protein, putative2e-0653.9
NC_008576:3331825:3339175333917533425313357Magnetococcus sp. MC-1, complete genomediguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)2e-0653.5
NC_011661:961129:9625519625519636811131Dictyoglomus turgidum DSM 6724, complete genomeExtracellular ligand-binding receptor3e-0653.5
NC_014828:2497462:2506564250656425077631200Ethanoligenens harbinense YUAN-3 chromosome, complete genomeExtracellular ligand-binding receptor4e-0653.1
NC_014355:220002:2318072318072330091203Candidatus Nitrospira defluvii, complete genomeputative ABC transporter Leu/Ile/Val-binding protein7e-0652