Pre_GI: BLASTP Hits

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Query: NC_007952:1934249:1935202 Burkholderia xenovorans LB400 chromosome 2, complete sequence

Start: 1935202, End: 1936956, Length: 1755

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007493:546000:5668985668985687571860Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequenceaerobic cobalt chelatase, CobT subunit2e-23111
NC_007205:424500:4445714445714463791809Candidatus Pelagibacter ubique HTCC1062, complete genomeCobalamin biosynthesis protein CobT9e-2099
NC_009505:1928000:1951921195192119538341914Brucella ovis ATCC 25840 chromosome I, complete sequencecobaltochelatase subunit CobT1e-1998.6
NC_015572:4063150:4094877409487740966251749Methylomonas methanica MC09 chromosome, complete genomeCobaltochelatase4e-1997.1
NC_009378:62215:6725267252696182367Yersinia pestis Pestoides F plasmid MT, complete sequenceporphyrin biosynthetic protein4e-1996.7
NC_008118:56777:6181461814641802367Yersinia pestis Nepal516 plasmid pMT, complete sequenceporphyrin biosynthetic protein4e-1996.7
NC_005815:61148:6814468144705102367Yersinia pestis biovar Microtus str. 91001 plasmid pMT1, completeputative porphyrin biosynthetic protein4e-1996.7
NC_004838:51013:8507585075874412367Yersinia pestis KIM plasmid pMT-1, complete sequenceputative porphyrin biosynthetic enzyme4e-1996.7
NC_008120:62000:6207262072639581887Yersinia pestis Antiqua plasmid pMT, complete sequenceporphyrin biosynthetic protein7e-1995.9
NC_010338:4481356:4496669449666944986121944Caulobacter sp. K31, complete genomecobalt chelatase, pCobT subunit2e-1894.4
NC_008609:206313:2072072072072089251719Pelobacter propionicus DSM 2379, complete genomevon Willebrand factor, type A9e-1272.4
NC_015563:5289875:5307464530746453091551692Delftia sp. Cs1-4 chromosome, complete genomecobaltochelatase5e-1170.1
NC_002937:2068117:2120862212086221224631602Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, completehypothetical protein2e-0964.7
NC_006510:1731939:1759235175923517611391905Geobacillus kaustophilus HTA426, complete genomehypothetical protein1e-0758.5
NC_007519:3391090:3399216339921634008591644Desulfovibrio alaskensis G20 chromosome, complete genomevon Willebrand factor, type A1e-0655.5
NC_016830:4010637:4034389403438940364102022Pseudomonas fluorescens F113 chromosome, complete genomeprotein NorD23e-0653.9
NC_015379:2575000:2576866257686625788842019Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,putative dinitrification protein5e-0653.5