Pre_GI: BLASTP Hits

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Query: NC_007951:3655088:3655088 Burkholderia xenovorans LB400 chromosome 1, complete sequence

Start: 3655088, End: 3656071, Length: 984

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010170:1580832:158669015866901587673984Bordetella petrii, complete genometranscriptional regulator, AraC family3e-176617
NC_015723:2550000:2553741255374125548051065Cupriavidus necator N-1 chromosome 2, complete sequenceAraC family transcriptional regulator3e-22106
NC_012721:2556160:2556160255616025571941035Burkholderia glumae BGR1 chromosome 2, complete genomeTranscriptional regulator, AraC family protein7e-2098.2
NC_007298:1418500:145904814590481460040993Dechloromonas aromatica RCB, complete genomeHelix-turn-helix, AraC type1e-1894
NC_009338:555587:5624375624375635461110Mycobacterium gilvum PYR-GCK chromosome, complete genomehelix-turn-helix domain-containing protein4e-1582.4
NC_009077:1725683:177062317706231771621999Mycobacterium sp. JLS, complete genomehelix-turn-helix- domain containing protein, AraC type6e-1478.6
NC_008705:1790222:1837844183784418389531110Mycobacterium sp. KMS, complete genomehelix-turn-helix- domain containing protein, AraC type8e-1478.2
NC_008705:1839983:1851259185125918523681110Mycobacterium sp. KMS, complete genomehelix-turn-helix- domain containing protein, AraC type8e-1478.2
NC_014118:987889:101553710155371016523987Burkholderia sp. CCGE1002 chromosome chromosome 2, completetranscriptional regulator, AraC family2e-1377
NC_016147:2964178:297845229784522979423972Pseudoxanthomonas spadix BD-a59 chromosome, complete genomeAraC family regulatory protein3e-1376.3
NC_011000:1216430:1250917125091712520081092Burkholderia cenocepacia J2315 chromosome 1, complete sequenceAraC family regulatory protein5e-1375.5
NC_007492:3384077:340643334064333407407975Pseudomonas fluorescens PfO-1, complete genomeTranscriptional Regulator, AraC family7e-1375.1
NC_016604:3184855:3214230321423032152311002Mycobacterium rhodesiae NBB3 chromosome, complete genometranscriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain1e-1274.3
NC_013947:326980:3285913285913296791089Stackebrandtia nassauensis DSM 44728 chromosome, complete genometranscriptional regulator, AraC family3e-1272.8
NC_010170:3944228:3955435395543539564451011Bordetella petrii, complete genomeAraC-type transcriptional regulator2e-1170.1
NC_009511:4582188:459546145954614596450990Sphingomonas wittichii RW1 chromosome, complete genomehelix-turn-helix domain-containing protein2e-1170.1
NC_006361:4521820:452975545297554530690936Nocardia farcinica IFM 10152, complete genomeputative transcriptional regulator2e-1067
NC_010170:3944228:396331239633123963491180Bordetella petrii, complete genomehypothetical protein2e-1066.6
NC_017506:1100679:112975111297511130716966Marinobacter adhaerens HP15 chromosome, complete genomehypothetical protein2e-1066.6
NC_008061:2153495:2153495215349521545021008Burkholderia cenocepacia AU 1054 chromosome 2, complete sequencetranscriptional regulator, AraC family5e-1065.5
NC_008545:115292:1348071348071358141008Burkholderia cenocepacia HI2424 plasmid 1, complete sequencetranscriptional regulator, AraC family1e-0964.3
NC_011958:735755:786309786309787232924Rhodobacter sphaeroides KD131 chromosome 2, complete genomeHelix-turn-helix-domain containing protein, AraC type2e-0963.9
NC_008392:1029134:1032894103289410339191026Burkholderia cepacia AMMD chromosome 3, complete sequencetranscriptional regulator, AraC family3e-0963.2
NC_011666:1572487:159137615913761592359984Methylocella silvestris BL2, complete genometranscriptional regulator, AraC family3e-0962.8
NC_010805:1642978:1668352166835216693561005Burkholderia multivorans ATCC 17616 chromosome 2, completeAraC family transcriptional regulator4e-0962.4
NC_014814:3364336:337792233779223378278357Mycobacterium sp. Spyr1 chromosome, complete genometranscriptional regulator, AraC family4e-0962.4
NC_017986:4790482:481891148189114819822912Pseudomonas putida ND6 chromosome, complete genomeputative AraC family transcriptional regulator6e-0962
NC_015312:6717973:6725802672580267268601059Pseudonocardia dioxanivorans CB1190 chromosome, complete genomeAraC family transcriptional regulator7e-0961.6
NC_014323:3976351:403368940336894034684996Herbaspirillum seropedicae SmR1 chromosome, complete genomeAraC family transcription regulator protein1e-0861.2
NC_004463:8401060:8411896841189684129091014Bradyrhizobium japonicum USDA 110, complete genometranscriptional regulatory protein2e-0860.5
NC_009077:2308634:231165523116552312050396Mycobacterium sp. JLS, complete genomehelix-turn-helix- domain containing protein, AraC type2e-0860.5
NC_010557:679656:7013457013457023731029Burkholderia ambifaria MC40-6 chromosome 3, complete sequencetranscriptional regulator, AraC family3e-0859.7
NC_007511:3103999:3124442312444231254461005Burkholderia sp. 383 chromosome 2, complete sequencetranscriptional regulator, AraC family8e-0858.2
NC_012522:5847699:5855486585548658564901005Rhodococcus opacus B4, complete genomeputative thc operon regulatory protein1e-0757.4
NC_020302:1241504:124750612475061248498993Corynebacterium halotolerans YIM 70093 = DSM 44683, completeAraC family transcriptional regulator1e-0757.4
NC_015733:2581324:260258326025832603554972Pseudomonas putida S16 chromosome, complete genomehypothetical protein5e-0755.5
NC_014323:992978:101159110115911012514924Herbaspirillum seropedicae SmR1 chromosome, complete genomenitrilase regulator protein6e-0755.5
NC_010468:1343228:1361194136119413622461053Escherichia coli ATCC 8739, complete genometranscriptional regulator, AraC family6e-0755.1
NC_004741:2526421:252820025282002528760561Shigella flexneri 2a str. 2457T, complete genomeputative ARAC-type regulatory protein1e-0654.7
NC_017328:2586171:258770325877032588329627Shigella flexneri 2002017 chromosome, complete genomeEthanolamine operon regulatory protein1e-0654.7
NC_008258:2542863:2543768254376825448201053Shigella flexneri 5 str. 8401, complete genomeputative ARAC-type regulatory protein8e-0754.7
NC_009482:1718000:173879917387991739746948Synechococcus sp. RCC307 chromosome, complete genomeAraC-type DNA-binding domain-containing protein3e-0653.1
NC_008319:262894:273633273633274598966Synechococcus sp. CC9311, complete genomeprobable transcriptional regulator, AraC family, putative6e-0652
NC_010676:2975572:298379829837982984772975Burkholderia phytofirmans PsJN chromosome 2, complete sequencetranscriptional regulator, AraC family6e-0652