Pre_GI: BLASTP Hits

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Query: NC_007951:3631772:3644930 Burkholderia xenovorans LB400 chromosome 1, complete sequence

Start: 3644930, End: 3645616, Length: 687

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010170:4463000:446622944662294466879651Bordetella petrii, complete genometranscriptional regulator, TetR family2e-56218
NC_015709:1459838:147418514741851474844660Zymomonas mobilis subsp. pomaceae ATCC 29192 chromosome, completeTetR family transcriptional regulator4e-2098.2
NC_013209:2759160:277140327714032772044642Acetobacter pasteurianus IFO 3283-01, complete genometranscriptional regulator TetR4e-1994.7
NC_008577:1489643:151097015109701511590621Shewanella sp. ANA-3 chromosome 1, complete sequencetranscriptional regulator, TetR family1e-1892.8
NC_011663:1627220:163153716315371632163627Shewanella baltica OS223 chromosome, complete genomeTetR family transcriptional regulator4e-1891.3
NC_008700:2788363:280763428076342808254621Shewanella amazonensis SB2B, complete genomeputative transcriptional regulator, TetR family2e-1686.3
NC_016027:1647110:165207416520741652781708Gluconacetobacter xylinus NBRC 3288, complete genometranscriptional regulator5e-1684.3
NC_014541:2978500:299438229943822994996615Ferrimonas balearica DSM 9799 chromosome, complete genometranscriptional regulator, TetR family6e-1684.3
NC_009092:1504363:152507015250701525681612Shewanella loihica PV-4, complete genometranscriptional regulator, TetR family2e-1582.8
NC_016002:2453919:247043024704302471047618Pseudogulbenkiania sp. NH8B, complete genomeTetR family transcriptional regulator1e-1479.7
NC_005126:2063667:208044220804422081116675Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein1e-1479.7
NC_014210:5309121:531665153166515317286636Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,transcriptional regulator, TetR family2e-1479.3
NC_015957:8677395:868260586826058683288684Streptomyces violaceusniger Tu 4113 chromosome, complete genomeregulatory protein TetR6e-1477.8
NC_008313:3456741:347227334722733472959687Ralstonia eutropha H16 chromosome 1, complete sequencetranscriptional regulator, TetR/AcrR-family7e-1477.4
NC_007954:1494291:149868114986811499301621Shewanella denitrificans OS217, complete genomeregulatory protein, TetR1e-1377
NC_010572:33724:520805208052712633Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative TetR-family transcriptional regulator3e-1375.5
NC_013859:9500:9513951310355843Azospirillum sp. B510 plasmid pAB510e, complete sequencetranscriptional regulator4e-1374.7
NC_010508:1206498:122332512233251223957633Burkholderia cenocepacia MC0-3 chromosome 1, complete sequencetranscriptional regulator, TetR family2e-1272.8
NC_007492:3462929:349938234993823500011630Pseudomonas fluorescens PfO-1, complete genomeTranscriptional Regulator, TetR family2e-1272.8
NC_014117:2608000:262618526261852626817633Burkholderia sp. CCGE1002 chromosome chromosome 1, completetranscriptional regulator, TetR family4e-1271.6
NC_015064:151607:153750153750154481732Acidobacterium sp. MP5ACTX9 chromosome, complete genomeregulatory protein TetR5e-1271.2
NC_010505:5525461:556925755692575569835579Methylobacterium radiotolerans JCM 2831, complete genometranscriptional regulator, TetR family5e-1271.2
NC_014666:1805806:182359318235931824237645Frankia sp. EuI1c chromosome, complete genomeregulatory protein TetR1e-1170.1
NC_017075:1674758:169781216978121698459648Rubrivivax gelatinosus IL144, complete genomeTetR family transcriptional regulator2e-1169.3
NC_010505:5525461:556038455603845561085702Methylobacterium radiotolerans JCM 2831, complete genometranscriptional regulator, TetR family4e-1168.6
NC_009485:1487485:150760115076011508173573Bradyrhizobium sp. BTAi1 chromosome, complete genomeTetR family transcriptional regulator3e-1065.5
NC_010170:1417615:142628214262821427076795Bordetella petrii, complete genometranscriptional regulator, TetR-family6e-1064.3
NC_009484:98250:104218104218104907690Acidiphilium cryptum JF-5 chromosome, complete genomeTetR family transcriptional regulator7e-1063.9
NC_015186:132567:135424135424136152729Acidiphilium multivorum AIU301, complete genomeTetR family transcriptional regulator8e-1063.9
NC_015063:122000:128714128714129406693Rahnella sp. Y9602 plasmid pRAHAQ02, complete sequenceTetR family transcriptional regulator1e-0963.2
NC_007794:561623:5764915764915777651275Novosphingobium aromaticivorans DSM 12444, complete genometranscriptional regulator, TetR family2e-0962.8
NC_010511:7024412:702935870293587030014657Methylobacterium sp. 4-46 chromosome, complete genomeTetR family transcriptional regulator8e-0960.8
NC_016894:3935161:395446439544643955075612Acetobacterium woodii DSM 1030 chromosome, complete genometranscriptional regulator TetR family8e-0960.8
NC_013131:7530000:753349175334917534183693Catenulispora acidiphila DSM 44928, complete genometranscriptional regulator, TetR family2e-0859.3
NC_013729:2133294:214409021440902144734645Kribbella flavida DSM 17836, complete genometranscriptional regulator, TetR family7e-0857.8
NC_006177:2398482:242190624219062422553648Symbiobacterium thermophilum IAM 14863, complete genomeTetR family transcriptional regulator1e-0756.6
NC_007946:4779745:480969748096974810536840Escherichia coli UTI89, complete genomeUidR transriptional regulator1e-0756.6
NC_009715:167513:182729182729183346618Campylobacter curvus 525.92 chromosome, complete genometranscription regulator protein1e-0756.6
NC_008253:3941938:396844639684463969285840Escherichia coli 536, complete genomeputative transcription regulator protein1e-0756.6
NC_008825:1113060:111747611174761118156681Methylibium petroleiphilum PM1, complete genomeputative transcription regulator protein2e-0756.2
NC_010694:1966676:196889219688921969524633Erwinia tasmaniensis, complete genomeTetR-family transcriptional regulator2e-0755.8
NC_009254:23000:259202592026573654Burkholderia vietnamiensis G4 chromosome 3, complete sequenceTetR family transcriptional regulator5e-0754.7
NC_009668:1591290:159361715936171594213597Ochrobactrum anthropi ATCC 49188 chromosome 2, complete sequenceTetR family transcriptional regulator7e-0754.3
NC_010506:537833:555196555196555801606Shewanella woodyi ATCC 51908, complete genometranscriptional regulator, TetR family7e-0754.3
NC_013595:4031947:403419340341934034831639Streptosporangium roseum DSM 43021, complete genomeputative transcriptional regulator, TetR family8e-0753.9
NC_013406:3650300:365940836594083660070663Paenibacillus sp. Y412MC10 chromosome, complete genomeTetR family transcriptional regulator8e-0753.9
NC_008228:816000:837355837355837951597Pseudoalteromonas atlantica T6c, complete genometranscriptional regulator, TetR family1e-0653.5
NC_010814:155834:160065160065160667603Geobacter lovleyi SZ, complete genometranscriptional regulator, TetR family2e-0653.1
NC_010512:734834:736231736231736884654Burkholderia cenocepacia MC0-3 chromosome 3, complete sequencetranscriptional regulator, TetR family1e-0653.1
NC_016948:1761020:178541517854151786047633Mycobacterium intracellulare MOTT-64 chromosome, complete genomehypothetical protein1e-0653.1
NC_003296:1461538:146352614635261464227702Ralstonia solanacearum GMI1000 plasmid pGMI1000MP, completePUTATIVE TRANSCRIPTION REGULATOR PROTEIN1e-0653.1
NC_011894:6888562:689151368915136892166654Methylobacterium nodulans ORS 2060, complete genometranscriptional regulator, TetR family2e-0652.8
NC_017904:2724941:274766527476652748234570Mycobacterium sp. MOTT36Y chromosome, complete genomeTetR family transcriptional regulator2e-0652.8
NC_008544:348500:350119350119350772654Burkholderia cenocepacia HI2424 chromosome 3, complete sequencetranscriptional regulator, TetR family2e-0652.4
NC_008062:370902:372299372299372952654Burkholderia cenocepacia AU 1054 chromosome 3, complete sequencetranscriptional regulator, TetR family2e-0652.4
NC_012968:63898:716047160472200597Methylotenera mobilis JLW8, complete genometranscriptional regulator, TetR family3e-0652.4
NC_014831:866614:875390875390876166777Thermaerobacter marianensis DSM 12885 chromosome, complete genometranscriptional regulator, TetR family3e-0652
NC_012691:2614603:268837726883772689009633Tolumonas auensis DSM 9187, complete genometranscriptional regulator, TetR family3e-0652
NC_007509:1383013:138503413850341385687654Burkholderia sp. 383 chromosome 3, complete sequencetranscriptional regulator, TetR family4e-0651.6
NC_016818:1795576:183812718381271838744618Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completetranscriptional regulator5e-0651.2
NC_008750:2332000:235360923536092354196588Shewanella sp. W3-18-1, complete genometranscriptional regulator, TetR family6e-0651.2
NC_005773:4539751:454948145494814549912432Pseudomonas syringae pv. phaseolicola 1448A, complete genometranscriptional regulatory protein7e-0650.8
NC_016111:2257166:227095022709502271552603Streptomyces cattleya NRRL 8057, complete genomeTetR-family transcriptional regulator8e-0650.8
NC_012912:2426520:243471224347122435335624Dickeya zeae Ech1591, complete genometranscriptional regulator, TetR family8e-0650.8