Pre_GI: BLASTP Hits

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Query: NC_007948:3541987:3551411 Polaromonas sp. JS666, complete genome

Start: 3551411, End: 3551992, Length: 582

Host Lineage: Polaromonas; Polaromonas; Comamonadaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: This strain was isolated from sediment contaminated with cis-dichloroethane (cDCE), a common pollutant resulting from widespread manufacture and use of industrial solvents. This bacterium is the only known organism capable of using cDCE as a sole carbon and energy source. The ability of this strain to convert ethene to epoxyethane suggests that the first step in the cDCE biodegradation pathway is the oxidation of cDCE to an epoxide compound. Bacteria that are able to grow on cDCE are rare, and have only been found in very few highly selective artificial environments. The discovery of this bacteria may provide a low cost, self-sustaining bioremediation method in areas where cDCE is a problem contaminant.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_006513:1695487:170804017080401708609570Azoarcus sp. EbN1, complete genomeprobable cold shock family protein7e-47186
NC_012108:2542328:255697125569712557495525Desulfobacterium autotrophicum HRM2, complete genomeputative cold shock domain family protein3e-28124
NC_004347:718091:748237748237748848612Shewanella oneidensis MR-1, complete genomecold shock domain family protein4e-28124
NC_009092:521519:542808542808543425618Shewanella loihica PV-4, complete genomecold-shock DNA-binding domain protein6e-28123
NC_010506:5195000:520433252043325204952621Shewanella woodyi ATCC 51908, complete genomecold-shock DNA-binding domain protein5e-25114
NC_006138:225832:252701252701253288588Desulfotalea psychrophila LSv54, complete genomehypothetical protein2e-24112
NC_013194:4034854:403871240387124039014303Candidatus Accumulibacter phosphatis clade IIA str. UW-1, completecold-shock DNA-binding protein family1e-22106
NC_004459:2443000:257510025751002575567468Vibrio vulnificus CMCP6 chromosome I, complete sequenceCold shock domain family protein8e-22103
NC_008751:1043269:108077710807771081310534Desulfovibrio vulgaris subsp. vulgaris DP4, complete genomeputative cold-shock DNA-binding domain protein5e-2097.4
NC_004603:1897532:190226619022661902760495Vibrio parahaemolyticus RIMD 2210633 chromosome I, completehypothetical protein1e-1995.9
NC_002937:1915787:192581719258171926353537Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, completecold shock domain protein4e-1994.4
NC_016147:151224:167376167376167663288Pseudoxanthomonas spadix BD-a59 chromosome, complete genomecold-shock DNA-binding protein family1e-1686.3
NC_013173:2884887:289990228999022900072171Desulfomicrobium baculatum DSM 4028, complete genome2e-1582
NC_017075:2293209:230344023034402303844405Rubrivivax gelatinosus IL144, complete genomehypothetical protein3e-1478.6
NC_009439:1174432:117984611798461180316471Pseudomonas mendocina ymp, complete genomehypothetical protein3e-1478.2
NC_009085:893601:909395909395909742348Acinetobacter baumannii ATCC 17978, complete genomeExcalibur5e-1167.4
NC_011595:3015895:302083630208363021183348Acinetobacter baumannii AB307-0294, complete genomehypothetical protein8e-1166.6
NC_008687:302450:322642322642322848207Paracoccus denitrificans PD1222 chromosome 2, complete sequenceputative cold-shock DNA-binding domain protein6e-0960.8
NC_002678:5060670:508021450802145080426213Mesorhizobium loti MAFF303099, complete genomecold shock protein2e-0755.8
NC_012854:1:537053705573204Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132505,cold-shock DNA-binding domain protein2e-0755.5
NC_011963:325806:328189328189328395207Rhodobacter sphaeroides KD131 chromosome 1, complete sequenceCold-shock DNA-binding protein family2e-0755.1
NC_007494:714525:732401732401732607207Rhodobacter sphaeroides 2.4.1 chromosome 2, complete sequenceCold-shock DNA-binding protein3e-0755.1
NC_011894:901630:915758915758915967210Methylobacterium nodulans ORS 2060, complete genomecold-shock DNA-binding domain protein4e-0754.7
NC_006138:2341975:234197523419752342589615Desulfotalea psychrophila LSv54, complete genomehypothetical protein4e-0754.7
NC_007494:714525:733277733277733510234Rhodobacter sphaeroides 2.4.1 chromosome 2, complete sequenceCold-shock DNA-binding protein6e-0753.9
NC_011958:735755:747514747514747747234Rhodobacter sphaeroides KD131 chromosome 2, complete genomeCold-shock DNA-binding protein8e-0753.5
NC_008601:753221:778319778319778522204Francisella tularensis subsp. novicida U112, complete genomecold shock protein, DNA-binding7e-0753.5
NC_007493:546000:548589548589548822234Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequenceCold-shock DNA-binding domain protein1e-0653.1
NC_014217:3024961:304180830418083042017210Starkeya novella DSM 506 chromosome, complete genomecold-shock DNA-binding domain protein1e-0652.8
NC_008687:302450:321481321481321687207Paracoccus denitrificans PD1222 chromosome 2, complete sequenceputative cold-shock DNA-binding domain protein1e-0652.8
NC_012108:3824977:383872138387213839374654Desulfobacterium autotrophicum HRM2, complete genomeputative cold-shock protein4e-0651.2
NC_015856:1733500:175381917538191754436618Collimonas fungivorans Ter331 chromosome, complete genomecold-shock DNA-binding domain-containing protein7e-0650.4
NC_007626:3522265:356045235604523560661210Magnetospirillum magneticum AMB-1, complete genomeCold shock protein9e-0650.1