Pre_GI Gene

Some Help

Host: NC_012854 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_012854:1 Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132505,

Host Lineage: Rhizobium leguminosarum; Rhizobium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host, Root nodule. This biovar is a symbiont of clover plants and is important commercially as it is used in the agricultural industry. Strain WSM1325 is compatible with many perennial clovers of Mediterranean origin used in farming, such as T. pratense, and is therefore one of the most important clover inoculants but is incompatible with American and African perennial clovers, such as those nodulated by the dissimilar strain WSM2304. This organism, like other Rhizobia, establishes a symbiotic relationship with a legume plant, providing nitrogen in exchange for a protected environment. The legume roots secrete flavonoids and isoflavonoids which the bacteria recognize and use to turn on genes involved in root nodulation. Many of the root nodulation genes are involved in synthesis and secretion of a nodule inducing signal, a lipochito-oligosaccharide molecule, which the plant recognizes, triggering nodule formation. The bacterium is endocytosed and exists inside a membrane bound organelle, the symbiosome, and fixes nitrogen for the plant cell while the host cell provides carbon compounds for the bacterium to grow on. The nitrogen fixation is important as it obviates the need for expensive and environmentally damaging fertilizer use.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
12213001179hypothetical protein
25472873327hypothetical protein
32373734498hypothetical proteinBLASTP
380350801278hypothetical proteinBLASTP
53705573204cold-shock DNA-binding domain proteinQuickGO ontologyBLASTP
56436431789protein of unknown function DUF88QuickGO ontologyBLASTP
652978961368hypothetical proteinBLASTP
81468316171hypothetical protein
831093651056putative transcriptional regulator XRE familyQuickGO ontologyBLASTP
9828117441917hypothetical proteinBLASTP
11749133441596hypothetical proteinBLASTP
13365149331569HSP90 family molecular chaperone-like proteinQuickGO ontologyBLASTP
14930165611632Radical SAM domain proteinQuickGO ontologyBLASTP
16554175791026DGQHR domain proteinQuickGO ontologyBLASTP