Pre_GI: BLASTP Hits

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Query: NC_007613:761234:769189 Shigella boydii Sb227, complete genome

Start: 769189, End: 769494, Length: 306

Host Lineage: Shigella boydii; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic that took place in China in the 1950s. Causes dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. Shigella boydii is uncommon except in India, where it was first isolated. Progression to clinical dysentery occurs in most patients infected with this organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011742:2823000:282326328232632823568306Escherichia coli S88 chromosome, complete genomeDinI-like damage-inducible protein2e-53207
NC_016845:1773416:178164517816451781878234Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,putative DinI-like damage-inducible protein2e-38157
NC_012947:2898179:290549729054972905730234Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeDinI family protein2e-38157
NC_011601:846358:862220862220862453234Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeDNA-damage-inducible protein2e-38157
NC_003198:4453457:44737534473753450773033978Salmonella enterica subsp. enterica serovar Typhi str. CT18,5e-35146
NC_006511:2677964:268745826874582687691234Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein2e-34144
NC_011147:2676972:268299426829942683227234Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein2e-34144
NC_017046:2869873:287938228793822879615234Salmonella enterica subsp. enterica serovar Typhimurium str. 798bacteriophage sos operon Tum protein3e-34143
NC_016857:2871689:288064028806402880873234Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74Prophage protein3e-34143
NC_016810:2871689:288064028806402880873234Salmonella enterica subsp. enterica serovar Typhimurium strputative bacteriophage sos operon Tum protein3e-34143
NC_020260:312805:326018326018326251234Cronobacter sakazakii Sp291, complete genomedinI-like protein in retron EC675e-34142
NC_011149:2802199:281269128126912812924234Salmonella enterica subsp. enterica serovar Agona str. SL483,1e-32138
NC_009648:3803622:382864238286423829124483Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeputative prophage protein6e-1579.3
NC_006856:95830:100618100618100866249Salmonella enterica subsp. enterica serovar Choleraesuis strImpC4e-1167
NC_007941:11319:562635626356511249Escherichia coli UTI89 plasmid pUTI89, complete sequenceUV protection and mutation protein2e-1064.7
NC_016612:3314846:333081733308173331050234Klebsiella oxytoca KCTC 1686 chromosome, complete genomehypothetical protein5e-0856.6
NC_010694:614985:63489963489963498587Erwinia tasmaniensis, complete genomepeptide leader protein3e-0753.9
NC_011283:3379181:341354834135483413781234Klebsiella pneumoniae 342 chromosome, complete genomeDinI family protein5e-0753.1
NC_011080:2761403:276556727655672765800234Salmonella enterica subsp. enterica serovar Newport str. SL254,hypothetical protein9e-0752.4
NC_016856:2812905:281706928170692817302234Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Shypothetical protein9e-0752.4
NC_017046:2756000:276260027626002762833234Salmonella enterica subsp. enterica serovar Typhimurium str. 798damage-inducible protein9e-0752.4
NC_015761:1017301:101823310182331018466234Salmonella bongori NCTC 12419, complete genomephage damage-inducible protein1e-0652
NC_020181:2097066:210660421066042106837234Enterobacter aerogenes EA1509E, complete genomeDNA-damage-inducible protein I2e-0650.8
NC_012912:1788308:183736018373601837602243Dickeya zeae Ech1591, complete genomeDinI family protein6e-0649.7