Pre_GI: BLASTP Hits

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Query: NC_007607:87000:91637 Shigella dysenteriae Sd197 plasmid pSD1_197, complete sequence

Start: 91637, End: 92329, Length: 693

Host Lineage: Shigella dysenteriae; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic in China in the 1950s. Causes bacillary dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. Shigella dysenteriae is the major cause of Shigella-related deaths in developing nations, mostly in young children.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007385:157516:163371163371164087717Shigella sonnei Ss046 plasmid pSS_046, complete sequenceIS186 ORF19e-132469
NC_009837:92000:1036701036701052411572Escherichia coli APEC O1 plasmid pAPEC-O1-ColBM, complete sequenceCvaB, IS186 transposase1e-131468
NC_012967:12161:1544315443165551113Escherichia coli B str. REL606 chromosome, complete genomeIS186/IS421 transposase2e-131468
NC_012947:3753375:3767167376716737682791113Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completetransposase IS4 family protein2e-131468
NC_009800:12162:1556015560166721113Escherichia coli HS, complete genomeIS186, transposase2e-131468
NC_010468:3970995:3985628398562839867401113Escherichia coli ATCC 8739, complete genometransposase IS4 family protein2e-131468
NC_009788:16360:2216622166233681203Escherichia coli E24377A plasmid pETEC_73, complete sequenceIS186, transposase3e-123441
NC_011768:1718869:1718869171886917199841116Desulfatibacillum alkenivorans AK-01, complete genometransposase IS4 family protein4e-25114
NC_016112:3190891:3209297320929732106431347Methylomicrobium alcaliphilum chromosome, complete genomehypothetical protein1e-1893.2
NC_016593:3249767:3273164327316432744951332Geobacillus thermoleovorans CCB_US3_UF5 chromosome, completetransposase2e-0962.4
NC_009617:4946000:4969048496904849704301383Clostridium beijerinckii NCIMB 8052 chromosome, complete genometransposase, IS4 family protein9e-0857
NC_010368:1:99089908112421335Halobacterium salinarum R1 plasmid PHS3, complete sequencetransposase (ISH5)2e-0756.2
NC_019962:492000:4995174995175008511335Natrinema pellirubrum DSM 15624, complete genometransposase family protein2e-0756.2
NC_019962:304899:3165463165463178801335Natrinema pellirubrum DSM 15624, complete genometransposase family protein2e-0756.2
NC_002978:234082:2377482377482390761329Wolbachia endosymbiont of Drosophila melanogaster, complete genometransposase, IS4 family3e-0755.5
NC_020050:296702:3169893169893179991011Cylindrospermum stagnale PCC 7417 plasmid pCYLST.01, partialtransposase family protein3e-0755.5
NC_018870:115982:164152164152165111960Thermacetogenium phaeum DSM 12270 chromosome, complete genomeIS4-like transposase8e-0753.9
NC_015416:1872000:1881144188114418824961353Methanosaeta concilii GP-6 chromosome, complete genometransposase, IS4 family8e-0753.9
NC_010368:140500:1460011460011473351335Halobacterium salinarum R1 plasmid PHS3, complete sequencetransposase (ISH5)1e-0653.1
NC_008750:2332000:234732723473272347902576Shewanella sp. W3-18-1, complete genome1e-0653.1
NC_019974:2541880:2550246255024625515501305Natronococcus occultus SP4, complete genometransposase family protein1e-0653.1
NC_017162:270460:2831552831552844261272Acinetobacter baumannii 1656-2 chromosome, complete genomePutative transposase TnpA22e-0652.4
NC_013967:1878045:1897872189787218992211350Haloferax volcanii DS2 chromosome, complete genometransposase (ISH5)6e-0651.2
NC_013967:827150:8366698366698380211353Haloferax volcanii DS2 chromosome, complete genometransposase (ISH5)6e-0651.2
NC_013966:236463:2416312416312429831353Haloferax volcanii DS2 plasmid pHV4, complete sequencetransposase (ISH5)6e-0651.2
NC_013966:355500:3657823657823671341353Haloferax volcanii DS2 plasmid pHV4, complete sequencetransposase (ISH5)6e-0651.2
NC_009656:115390:1249551249551262261272Pseudomonas aeruginosa PA7 chromosome, complete genometransposase DDE domain-containing protein5e-0651.2
NC_013966:399215:4388484388484401971350Haloferax volcanii DS2 plasmid pHV4, complete sequencetransposase (ISH5)8e-0650.8
NC_013967:227072:2438762438762452281353Haloferax volcanii DS2 chromosome, complete genometransposase (ISH5)8e-0650.8
NC_013967:1687825:1694560169456016959121353Haloferax volcanii DS2 chromosome, complete genometransposase (ISH5)8e-0650.8
NC_013964:161105:1826031826031839521350Haloferax volcanii DS2 plasmid pHV3, complete sequencetransposase (ISH5)8e-0650.8