Pre_GI: BLASTP Hits

Some Help

Query: NC_007607:87000:104623 Shigella dysenteriae Sd197 plasmid pSD1_197, complete sequence

Start: 104623, End: 104811, Length: 189

Host Lineage: Shigella dysenteriae; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic in China in the 1950s. Causes bacillary dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. Shigella dysenteriae is the major cause of Shigella-related deaths in developing nations, mostly in young children.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017319:192482:207702207702207911210Shigella flexneri 2002017 plasmid pSFxv_1, complete sequenceputative regulator3e-21100
NC_007608:97092:110679110679110888210Shigella boydii Sb227 plasmid pSB4_227, complete sequenceputative regulator3e-21100
NC_011749:34056:533085330853517210Escherichia coli UMN026 plasmid p1ESCUM, complete sequencehemolysin expression-modulating protein hmo2e-2097.4
NC_010660:175200:190710190710190916207Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequencehypothetical protein2e-1994.4
NC_004344:589375:607573607573607776204Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis,hypothetical protein3e-1167.4
NC_012880:1127997:115129411512941151497204Dickeya dadantii Ech703, complete genomeHemolysin expression modulating family protein6e-1166.2
NC_016893:218376:224256224256224459204Wigglesworthia glossinidia endosymbiont of Glossina morsitanshemolysin expression modulating protein1e-1065.5
NC_015663:1869000:188221118822111882414204Enterobacter aerogenes KCTC 2190 chromosome, complete genomegene expression modulator2e-1064.7
NC_004431:3409389:348569434856943485918225Escherichia coli CFT073, complete genomeHaemolysin expression modulating protein7e-1062.8
NC_015567:1127780:115196511519651152168204Serratia sp. AS9 chromosome, complete genomehemolysin expression modulating family protein8e-1062.4
NC_015566:1127595:115178011517801151983204Serratia sp. AS12 chromosome, complete genomehemolysin expression modulating family protein8e-1062.4
NC_011751:3453683:350879835087983508938141Escherichia coli UMN026 chromosome, complete genome3e-0960.8
NC_004431:279868:285015285015285155141Escherichia coli CFT073, complete genomeHaemolysin expression modulating protein6e-0959.7
NC_013716:5201097:523261552326155232827213Citrobacter rodentium ICC168, complete genomeputative haemolysin expression regulatory protein3e-0857.4