Pre_GI: BLASTP Hits

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Query: NC_007385:157516:168626 Shigella sonnei Ss046 plasmid pSS_046, complete sequence

Start: 168626, End: 169345, Length: 720

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic in China in the 1950s. A leading cause of dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. This extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007608:97092:102211102211102930720Shigella boydii Sb227 plasmid pSB4_227, complete sequencehypothetical protein6e-139493
NC_004851:191709:198108198108198827720Shigella flexneri 2a str. 301 plasmid pCP301, complete sequencehypothetical protein7e-138489
NC_010660:175200:182245182245182964720Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequenceTrbH9e-138489
NC_007607:87000:953749537496093720Shigella dysenteriae Sd197 plasmid pSD1_197, complete sequenceTrbH6e-134476