Pre_GI: BLASTP Hits

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Query: NC_007385:157516:163371 Shigella sonnei Ss046 plasmid pSS_046, complete sequence

Start: 163371, End: 164087, Length: 717

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic in China in the 1950s. A leading cause of dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. This extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009837:92000:1036701036701052411572Escherichia coli APEC O1 plasmid pAPEC-O1-ColBM, complete sequenceCvaB, IS186 transposase5e-127453
NC_012967:12161:1544315443165551113Escherichia coli B str. REL606 chromosome, complete genomeIS186/IS421 transposase7e-127452
NC_012947:3753375:3767167376716737682791113Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completetransposase IS4 family protein7e-127452
NC_009800:12162:1556015560166721113Escherichia coli HS, complete genomeIS186, transposase7e-127452
NC_010468:3970995:3985628398562839867401113Escherichia coli ATCC 8739, complete genometransposase IS4 family protein7e-127452
NC_007607:87000:916379163792329693Shigella dysenteriae Sd197 plasmid pSD1_197, complete sequenceIS186 ORF11e-123442
NC_009788:16360:2216622166233681203Escherichia coli E24377A plasmid pETEC_73, complete sequenceIS186, transposase3e-115414
NC_011768:1718869:1718869171886917199841116Desulfatibacillum alkenivorans AK-01, complete genometransposase IS4 family protein3e-21102
NC_016112:3190891:3209297320929732106431347Methylomicrobium alcaliphilum chromosome, complete genomehypothetical protein2e-1479.3
NC_016593:3249767:3273164327316432744951332Geobacillus thermoleovorans CCB_US3_UF5 chromosome, completetransposase3e-0755.8