Pre_GI: BLASTP Hits

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Query: NC_007384:2933625:2942092 Shigella sonnei Ss046, complete genome

Start: 2942092, End: 2942235, Length: 144

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic in China in the 1950s. A leading cause of dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. This extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011741:2818750:282782728278272828084258Escherichia coli IAI1 chromosome, complete genomeputative DNA invertase fragment pinH1e-2098.2
CU928160:2818750:282782728278272828084258Escherichia coli IAI1 chromosome, complete genomeputative DNA invertase fragment, putative pinH1e-2098.2
NC_009801:2898426:294351529435152943772258Escherichia coli E24377A, complete genome1e-2098.2
NC_016822:3065426:307339630733963073539144Shigella sonnei 53G, complete genomehypothetical protein3e-2097.1
CU928145:2973968:299368129936812993869189Escherichia coli 55989 chromosome, complete genomefragment of putative invertase fragment (fragment) (partial)8e-2095.5
NC_011748:2973968:299368129936812993869189Escherichia coli 55989, complete genome8e-2095.5
NC_002655:3538656:357253935725393572682144Escherichia coli O157:H7 EDL933, complete genomehypothetical protein3e-1994
AC_000091:2747520:278172127817212781864144Escherichia coli W3110 DNA, complete genome3e-1994
NC_000913:2746886:278108727810872781230144Escherichia coli K12, complete genomepredicted invertase fragment (pseudogene)3e-1994
NC_010473:2839902:287285228728522872995144Escherichia coli str. K-12 substr. DH10B, complete genome3e-1994
NC_010468:1130000:114096011409601141103144Escherichia coli ATCC 8739, complete genomehypothetical protein3e-1994
NC_013008:3525428:356421035642103564353144Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein3e-1994
NC_013941:3300000:334299333429933343136144Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeDNA-invertase from prophage CP4-443e-1994
NC_011750:2928990:294905729490572949323267Escherichia coli IAI39 chromosome, complete genomeputative invertase fragment (fragment)2e-1891.3