Pre_GI: BLASTP Hits

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Query: NC_007333:1743890:1840500 Thermobifida fusca YX, complete genome

Start: 1840500, End: 1841237, Length: 738

Host Lineage: Thermobifida fusca; Thermobifida; Nocardiopsaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Produces thermostable enzymes. Members of this genus are distinguished from most actinomycetes by their ability to form clustered spores that attach directly to the substrate mycelia, and not to the aerial mycelia. Moreover, these bacteria do not produce aerial mycelia at all. M. fusca is the most thermophilic, with some growth detectable at up to 75 degrees C. The natural habitat of Thermobifida is self-heated organic materials, like rotting hay, compost, manure or urban waste piles, etc., which they share with other thermophilic and thermotolerant actinomycetes. Biological and physiological features of these bacteria are accordingly adapted to the conditions of such environments, namely the high temperatures and the presence of abundant plant materials and other bio-polymer substrates of natural origin. Actinomycetes are well suited for this environment because they generally grow as branching hyphae and are well adapted to penetration and degradation of insoluble substrates such as lignocellulose. Spores of Thermobifida are known to cause allergic respiratory diseases called mushroom worker disease and farmer's lung, which develop in agricultural workers who by the nature of their work happen to breathe in significant amounts of actinomycete spores from hay, compost, etc. Some isolates of this organism are able to mineralize plastic disposals and other anthropogenic xenobiotics. Thermobifidaare of particular interest because they produce multiple thermostable enzymes involved in the degradation of lignocellulose.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013510:3117837:313465131346513135355705Thermomonospora curvata DSM 43183, complete genomeCRISPR-associated protein Cas5 family2e-79295
NC_014210:1588426:159214415921441592872729Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,CRISPR-associated protein Cas5 family5e-77287
NC_013131:4422000:443010544301054430842738Catenulispora acidiphila DSM 44928, complete genomeCRISPR-associated protein Cas5 family8e-64243
NC_006361:4574536:458656245865624587269708Nocardia farcinica IFM 10152, complete genomehypothetical protein1e-47189
NC_019673:1988853:203800820380082038724717Saccharothrix espanaensis DSM 44229 complete genomeCRISPR-associated protein cas5 family protein2e-46185
NC_015389:481282:493160493160493864705Coriobacterium glomerans PW2 chromosome, complete genomeCRISPR-associated protein, Cas5e family2e-44179
NC_018720:1812000:181630818163081817021714Bifidobacterium asteroides PRL2011 chromosome, complete genomeCRISPR-associated protein Cas53e-44178
NC_016109:603829:615937615937616770834Kitasatospora setae KM-6054, complete genomeputative CRISPR-associated protein1e-41170
NC_007164:775000:779093779093779800708Corynebacterium jeikeium K411, complete genomehypothetical protein6e-39160
NC_012590:977920:990201990201990917717Corynebacterium aurimucosum ATCC 700975, complete genomeCRISPR-associated protein2e-37155
NC_013159:1422370:143391014339101434620711Saccharomonospora viridis DSM 43017, complete genomeCRISPR-associated protein Cas57e-31134
NC_008278:514600:526039526039526866828Frankia alni ACN14a, complete genomehypothetical protein5e-29127
NC_017186:6395435:644561064456106446320711Amycolatopsis mediterranei S699 chromosome, complete genomehypothetical protein6e-29127
NC_014318:6395392:644556664455666446276711Amycolatopsis mediterranei U32 chromosome, complete genomehypothetical protein6e-29127
NC_010610:795975:812476812476813183708Lactobacillus fermentum IFO 3956, complete genomehypothetical protein7e-29127
NC_008526:343445:353626353626354336711Lactobacillus casei ATCC 334, complete genomeCRISPR-associated protein2e-28126
NC_015387:942974:957079957079957744666Marinithermus hydrothermalis DSM 14884 chromosome, complete genomeCRISPR-associated protein Cas5 family6e-28124
NC_015737:2146953:215817721581772158896720Clostridium sp. SY8519, complete genomehypothetical protein1e-27123
NC_014727:798191:816180816180816881702Lactobacillus delbrueckii subsp. bulgaricus ND02 chromosome,crispr-associated protein4e-27121
NC_008529:735233:753026753026753727702Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365, completeCRISPR-associated protein1e-26119
NC_015170:54000:658756587566579705Deinococcus proteolyticus MRP plasmid pDEIPR03, complete sequenceCRISPR-associated protein Cas5 family4e-26118
NC_008054:745704:760882760882761583702Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, completehypothetical protein8e-26117
NC_007775:723925:735589735589736212624Synechococcus sp. JA-3-3Ab, complete genomeCRISPR-associated protein Cas5, Ecoli subtype8e-26117
NC_015951:107360:109267109267110130864Streptomyces violaceusniger Tu 4113 plasmid pSTRVI01, completeCRISPR-associated protein Cas5 family5e-25114
NC_008609:2518993:252805925280592528757699Pelobacter propionicus DSM 2379, complete genomeCRISPR-associated protein Cas5 family2e-22106
NC_007333:1743890:183106218310621831826765Thermobifida fusca YX, complete genomeCRISPR-associated CT1976 family protein2e-22105
NC_007356:1165760:120474512047451205362618Dehalococcoides sp. CBDB1, complete genomehypothetical protein4e-21101
NC_013890:1175931:118059511805951181212618Dehalococcoides sp. GT chromosome, complete genomeCRISPR-associated protein Cas5 family4e-21101
NC_015436:1287873:130012813001281300826699Spirochaeta coccoides DSM 17374 chromosome, complete genomeCRISPR-associated protein Cas5 family1e-1480.1
NC_007643:185135:201892201892202677786Rhodospirillum rubrum ATCC 11170, complete genomeCRISPR-associated CT1976 family protein2e-1272.4
NC_015676:1663700:167117516711751671897723Methanosalsum zhilinae DSM 4017 chromosome, complete genomeCRISPR-associated protein Cas5 family4e-1272
NC_010468:1029471:104235110423511043025675Escherichia coli ATCC 8739, complete genomeCRISPR-associated protein Cas5 family6e-1167.8
NC_012759:2757826:276420827642082764882675Escherichia coli BW2952 chromosome, complete genomehypothetical protein1e-1067
NC_010473:2963951:297093829709382971612675Escherichia coli str. K-12 substr. DH10B, complete genomehypothetical protein1e-1067
NC_000913:2873443:287839628783962879070675Escherichia coli K12, complete genomehypothetical protein1e-1067
AC_000091:2872000:287903028790302879704675Escherichia coli W3110 DNA, complete genomehypothetical protein1e-1067
NC_009800:2889928:289760728976072898287681Escherichia coli HS, complete genomeCRISPR-associated protein Cas5, Ecoli subtype6e-1064.7
NC_002932:1851070:187538318753831876099717Chlorobium tepidum TLS, complete genomehypothetical protein2e-0859.7
NC_002939:1505701:151804415180441518724681Geobacter sulfurreducens PCA, complete genomeCRISPR-associated CT1976 family protein5e-0858.2
NC_014355:1461355:147253414725341473334801Candidatus Nitrospira defluvii, complete genomeCRISPR-associated protein Cas5e8e-0857.8
NC_013851:759500:764629764629765312684Allochromatium vinosum DSM 180 chromosome, complete genomeCRISPR-associated protein Cas5 family4e-0755.1