Pre_GI: BLASTP Hits

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Query: NC_007333:1743890:1790694 Thermobifida fusca YX, complete genome

Start: 1790694, End: 1791725, Length: 1032

Host Lineage: Thermobifida fusca; Thermobifida; Nocardiopsaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Produces thermostable enzymes. Members of this genus are distinguished from most actinomycetes by their ability to form clustered spores that attach directly to the substrate mycelia, and not to the aerial mycelia. Moreover, these bacteria do not produce aerial mycelia at all. M. fusca is the most thermophilic, with some growth detectable at up to 75 degrees C. The natural habitat of Thermobifida is self-heated organic materials, like rotting hay, compost, manure or urban waste piles, etc., which they share with other thermophilic and thermotolerant actinomycetes. Biological and physiological features of these bacteria are accordingly adapted to the conditions of such environments, namely the high temperatures and the presence of abundant plant materials and other bio-polymer substrates of natural origin. Actinomycetes are well suited for this environment because they generally grow as branching hyphae and are well adapted to penetration and degradation of insoluble substrates such as lignocellulose. Spores of Thermobifida are known to cause allergic respiratory diseases called mushroom worker disease and farmer's lung, which develop in agricultural workers who by the nature of their work happen to breathe in significant amounts of actinomycete spores from hay, compost, etc. Some isolates of this organism are able to mineralize plastic disposals and other anthropogenic xenobiotics. Thermobifidaare of particular interest because they produce multiple thermostable enzymes involved in the degradation of lignocellulose.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013206:21288:386753867539646972Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446integrase family protein3e-35149
NC_012988:3288253:330339033033903304355966Methylobacterium extorquens DM4, complete genomeintegrase7e-34144
NC_011894:983572:995769995769996758990Methylobacterium nodulans ORS 2060, complete genomeintegrase family protein8e-31134
NC_010511:3674178:372811937281193729042924Methylobacterium sp. 4-46 chromosome, complete genomeintegrase family protein2e-28126
NC_016812:258500:2835232835232845601038Sinorhizobium fredii HH103, complete genomeintegrase family protein2e-28126
NC_015952:171707:1861581861581877201563Streptomyces violaceusniger Tu 4113 plasmid pSTRVI02, completeRecombination endonuclease VII3e-25115
NC_013958:29548:341623416235157996Nitrosococcus halophilus Nc4 plasmid pNHAL01, complete sequenceintegrase domain protein SAM domain protein5e-22105
NC_013732:136673:143650143650144639990Spirosoma linguale DSM 74 plasmid pSLIN02, complete sequenceintegrase family protein7e-22105
NC_010510:409469:416469416469417404936Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01, completeintegrase family protein6e-21102
NC_018524:4848154:4876338487633848775551218Nocardiopsis alba ATCC BAA-2165 chromosome, complete genomephage integrase family protein1e-20100
NC_008573:195317:2039462039462049681023Shewanella sp. ANA-3 plasmid 1, complete sequencephage integrase family protein7e-2098.2
NC_014210:2597000:2611347261134726125881242Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,integrase family protein2e-1996.7
NC_014159:37920:5369553695548791185Tsukamurella paurometabola DSM 20162 plasmid pTpau01, completeintegrase family protein1e-1894.4
NC_010162:1767296:178052317805231781320798Sorangium cellulosum 'So ce 56', complete genomeintegrase-like protein8e-1891.7
NC_010162:1767296:177939417793941780293900Sorangium cellulosum 'So ce 56', complete genomeintegrase-like protein1e-1790.5
NC_006672:47610:4761047610490581449Gluconobacter oxydans 621H plasmid pGOX1, complete sequenceIntegrase-like protein3e-1789.7
NC_011138:3182807:3198680319868031996901011Alteromonas macleodii 'Deep ecotype', complete genomePhage integrase3e-1789.7
NC_019012:61360:825028250283473972Fibrella aestuarina BUZ 2 plasmid pFAES01, complete sequenceIntegrase/recombinase xerD-like protein5e-1582
NC_011887:110618:1319371319371329981062Methylobacterium nodulans ORS 2060 plasmid pMNOD02, completeintegrase family protein4e-1479
NC_013235:3129384:313222031322203133188969Nakamurella multipartita DSM 44233, complete genomeintegrase family protein7e-1478.6
NC_013166:1341575:135602813560281356969942Kangiella koreensis DSM 16069, complete genomeintegrase family protein7e-1478.6
NC_010501:2511887:253435325343532535288936Pseudomonas putida W619, complete genomeintegrase family protein1e-1377.4
NC_013211:163390:1733131733131748031491Acetobacter pasteurianus IFO 3283-01 plasmid pAPA01-020, completephage DNA recombinase1e-1377.4
NC_017105:163390:1733131733131748031491Acetobacter pasteurianus IFO 3283-01-42C plasmid pAPA42C_020,phage DNA recombinase1e-1377.4
NC_017113:163390:1733131733131748031491Acetobacter pasteurianus IFO 3283-12 plasmid pAPA12-020, completephage DNA recombinase1e-1377.4
NC_017118:163390:1733131733131748031491Acetobacter pasteurianus IFO 3283-03 plasmid pAPA03-020, completephage DNA recombinase1e-1377.4
NC_017122:163390:1733131733131748031491Acetobacter pasteurianus IFO 3283-07 plasmid pAPA07-020, completephage DNA recombinase1e-1377.4
NC_017126:163390:1733131733131748031491Acetobacter pasteurianus IFO 3283-22 plasmid pAPA22-020, completephage DNA recombinase1e-1377.4
NC_017131:163390:1733131733131748031491Acetobacter pasteurianus IFO 3283-26 plasmid pAPA26-020, completephage DNA recombinase1e-1377.4
NC_017149:163390:1733131733131748031491Acetobacter pasteurianus IFO 3283-32 plasmid pAPA32-020, completephage DNA recombinase1e-1377.4
NC_009138:1518315:152966615296661530664999Herminiimonas arsenicoxydans, complete genomeunknown prophage; integrase-like protein (Cointegrate resolution protein S) (partial)2e-1377
NC_007507:101887:104425104425105138714Xanthomonas campestris pv. vesicatoria str. 85-10 plasmid pXCV183,putative cointegrate resolution protein S4e-1272.8
NC_015410:2698572:271550727155072716487981Pseudomonas mendocina NK-01 chromosome, complete genomephage integrase family protein4e-1272.4
NC_018080:3088866:312118031211803122172993Pseudomonas aeruginosa DK2 chromosome, complete genomephage integrase family protein4e-1272.4
NC_007677:771168:8244758244758265382064Salinibacter ruber DSM 13855, complete genomePhage integrase, N-terminal SAM-like domain protein5e-1272.4
NC_011662:2374955:238053023805302381471942Thauera sp. MZ1T, complete genomeintegrase family protein6e-1272
NC_009439:2427120:247785424778542478813960Pseudomonas mendocina ymp, complete genomephage integrase family protein9e-1271.2
NC_020541:2191600:220585722058572206834978Rhodanobacter sp. 2APBS1, complete genomesite-specific recombinase XerC2e-1170.5
NC_014032:825793:9156479156479177042058Salinibacter ruber M8 chromosome, complete genometyrosine recombinase XerD2e-1170.5
NC_016147:623666:6367486367486380191272Pseudoxanthomonas spadix BD-a59 chromosome, complete genomeputative phage integrase2e-1170.5
NC_020541:2264521:227697222769722277952981Rhodanobacter sp. 2APBS1, complete genomesite-specific recombinase XerC2e-1170.1
NC_007508:2756945:2770341277034127716151275Xanthomonas campestris pv. vesicatoria str. 85-10, complete genomecointegrate resolution protein S2e-1170.1
NC_010943:2499092:2500946250094625021151170Stenotrophomonas maltophilia K279a, complete genomeputative integrase5e-1168.9
NC_008750:2332000:2337459233745923387091251Shewanella sp. W3-18-1, complete genomephage integrase family protein5e-1168.9
NC_009659:1984980:198761919876191988593975Janthinobacterium sp. Marseille chromosome, complete genomecointegrate resolution protein S7e-1168.2
NC_009659:1923925:196707519670751968007933Janthinobacterium sp. Marseille chromosome, complete genomecointegrate resolution protein S1e-1067.8
NC_011758:247666:2655772655772666381062Methylobacterium chloromethanicum CM4 plasmid pMCHL01, completeintegrase family protein1e-1067.4
NC_010510:388885:3984003984003994611062Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01, completeintegrase family protein3e-1066.2
NC_017986:5867782:586819858681985869166969Pseudomonas putida ND6 chromosome, complete genomecointegrase4e-1065.9
NC_017075:2733898:2742785274278527438431059Rubrivivax gelatinosus IL144, complete genomeintegrase family protein4e-1065.9
NC_007507:101887:123354123354124199846Xanthomonas campestris pv. vesicatoria str. 85-10 plasmid pXCV183,putative cointegrate resolution protein S5e-1065.5
NC_008269:577111:5820615820615832601200Rhodococcus sp. RHA1 plasmid pRHL1, complete sequenceprobable integrase9e-1064.7
NC_018080:3088866:309571130957113096682972Pseudomonas aeruginosa DK2 chromosome, complete genomecointegrate resolution protein S3e-0962.8
NC_009656:3127240:316451031645103165481972Pseudomonas aeruginosa PA7 chromosome, complete genomecointegrate resolution protein S3e-0962.8
NC_008463:3168837:318711031871103188081972Pseudomonas aeruginosa UCBPP-PA14, complete genomeCointegrate resolution protein S3e-0962.8
NC_007722:2172000:2192258219225821934601203Erythrobacter litoralis HTCC2594, complete genomeIntegrase-like protein3e-0859.7
NC_010943:2499092:251503325150332515743711Stenotrophomonas maltophilia K279a, complete genomeputative integrase1e-0758.2
NC_009438:236424:254905254905255900996Shewanella putrefaciens CN-32 chromosome, complete genomephage integrase family protein2e-0757
NC_014541:2122788:212976021297602130719960Ferrimonas balearica DSM 9799 chromosome, complete genomeintegrase family protein1e-0654.7
NC_011071:2207385:2213586221358622146651080Stenotrophomonas maltophilia R551-3, complete genomeintegrase family protein2e-0653.5
NC_008536:8541267:856873485687348569168435Solibacter usitatus Ellin6076, complete genomehypothetical protein2e-0653.5
NC_013174:1366786:1369043136904313700501008Jonesia denitrificans DSM 20603, complete genomeintegrase family protein5e-0652.4
NC_010511:3674178:372000337200033720428426Methylobacterium sp. 4-46 chromosome, complete genome1e-0551.2