Pre_GI: BLASTP Hits

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Query: NC_006511:4119332:4126676 Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC

Start: 4126676, End: 4126748, Length: 73

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This serovar has a narrow host range and causes a typhoid-like (paratyphoid fever) illness in humans. It is especially prevalent in southern and eastern Asia, and has been associated with some particularly virulent outbreaks. A number of isolates are increasingly antibiotic resistant. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016902:3863932:38858563885856388593176Escherichia coli KO11FL chromosome, complete genometRNA-Ala2e-0650.8
NC_003198:3586000:35981943598194359826976Salmonella enterica subsp. enterica serovar Typhi str. CT18,tRNA-Ala2e-0650.8
NC_003198:2703013:27156662715666271574176Salmonella enterica subsp. enterica serovar Typhi str. CT18,tRNA-Ala2e-0650.8
CP002516:3863932:38858563885856388593176Escherichia coli KO11, complete genometRNA-Ala2e-0650.8
NC_009648:4656187:46651564665156466523176Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genometRNA-Ala2e-0650.8
NC_002695:4153394:41619714161971416204676Escherichia coli O157:H7 str. Sakai, complete genometRNA-Ala2e-0650.8
CP002185:3627992:36399283639928364000376Escherichia coli W, complete genometRNA-Ala2e-0650.8
NC_013282:3962188:39718283971828397190073Cronobacter turicensis, complete genometRNA-Ala3e-0650.8
NC_010067:4149298:41537774153777415384973Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completetRNA-Ala3e-0650.8