Pre_GI: BLASTP Hits

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Query: NC_006511:2501500:2518781 Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC

Start: 2518781, End: 2519083, Length: 303

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This serovar has a narrow host range and causes a typhoid-like (paratyphoid fever) illness in humans. It is especially prevalent in southern and eastern Asia, and has been associated with some particularly virulent outbreaks. A number of isolates are increasingly antibiotic resistant. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011147:2496808:251431725143172514619303Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein1e-52204
NC_016860:364981:377118377118377420303Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein1e-51201
NC_006905:368942:382199382199382501303Salmonella enterica subsp. enterica serovar Choleraesuis strantitermination protein4e-46182
NC_012125:1330066:134402713440271344365339Salmonella enterica subsp. enterica serovar Paratyphi C strainbacteriophage ST64T protein 248e-35145
NC_011205:609464:625524625524625856333Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853gp541e-34145
NC_011751:1405381:141741414174141417806393Escherichia coli UMN026 chromosome, complete genomeputative regulatory protein N1e-32138
NC_011601:717072:728867728867729175309Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeearly gene regulator4e-32136
NC_017328:303987:316980316980317288309Shigella flexneri 2002017 chromosome, complete genomeantitermination of transcription at nut site protein4e-32136
NC_009778:2993218:301767730176773018009333Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein1e-21101
NC_011740:2072173:211210021121002112525426Escherichia fergusonii ATCC 35469, complete genomeconserved hypothetical protein from phage origin3e-21100
NC_013282:1200993:121313312131331213474342Cronobacter turicensis, complete genomeProbable regulatory protein N5e-2096.3