Pre_GI: BLASTP Hits

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Query: NC_005126:3485330:3493433 Photorhabdus luminescens subsp. laumondii TTO1, complete genome

Start: 3493433, End: 3494494, Length: 1062

Host Lineage: Photorhabdus luminescens; Photorhabdus; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated on Trinidad and Tobago. It is a symbiont of the nematode Heterorhabditis bacteriophora. Bioluminescent bacterium. This organism is unusual in that it is symbiotic within one insect, and pathogenic in another, the only organism that is known to exhibit this dual phenotype. Enzymes are then released by the bacteria that result in rapid degradation of the insect body, allowing both bacteria and nematode to feed and reproduce. During this period Photorhabdus luminescens releases bacteriocidal products, including antibiotics and bacteriocins, that prevent infection of the larva by competitive microbes. The result is promotion of Photorhabdus luminescens-nematode interactions that result in continuation of the symbiotic relationship. In order to engage in a symbiotic relationship with the nematode and a pathogenic one with the insect larva, the bacterium encodes specific factors that encourage both. These include a large number of genes that code for secreted toxins and enzymes, as well as genes that encode products for the production of antibiotics and bacteriocins. Secretion of these products occurs by an array of systems including type I, type II, and type III secretion systems. The type III system is closely related to the Yersinia plasmid-encoded type III system. Genes that promote symbiotic relationships are also encoded on genomic islands on the chromosome including some that affect nematode development. Virulence genes appear to be active during exponential growth. Symbiotic genes appear to function during stationary phase (post-exponential) growth. The switch from one state to another is controlled. Photorhabdus luminescens is capable of giving off light, a complex process that requires the products of the lux operon.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012962:1827000:1836682183668218377431062Photorhabdus asymbiotica, complete genomecobalamin biosynthesis protein g (cbig)6e-171600
NC_011149:2040396:2064565206456520656201056Salmonella enterica subsp. enterica serovar Agona str. SL483,CbiG7e-115414
NC_011094:2061000:2086253208625320873081056Salmonella enterica subsp. enterica serovar Schwarzengrund strcobalamin biosynthesis protein CbiG2e-112405
NC_013892:853366:8618408618408629041065Xenorhabdus bovienii SS-2004 chromosome, complete genomeprotein cbiG8e-109393
NC_009089:3998347:4016494401649440176151122Clostridium difficile 630, complete genomeputative cobalamin biosynthesis protein7e-53207
NC_013316:3863728:3881898388189838830191122Clostridium difficile R20291, complete genomeputative cobalamin biosynthesis protein4e-52205
NC_015519:488550:4921914921914932971107Tepidanaerobacter sp. Re1 chromosome, complete genomecobalamin (vitamin B12) biosynthesis CbiG protein3e-40166
NC_014734:3086165:3099233309923331002401008Paludibacter propionicigenes WB4 chromosome, complete genomecobalamin (vitamin b12) biosynthesis cbig protein3e-39162
NC_014633:442755:471968471968472957990Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequencecobalamin (vitamin B12) biosynthesis protein CbiG1e-37157
NC_004557:749330:763231763231764226996Clostridium tetani E88, complete genomecobalamin biosynthesis protein CbiG5e-37155
NC_014328:3482980:3487674348767434886781005Clostridium ljungdahlii ATCC 49587 chromosome, complete genomecobalamin biosynthesis protein CbiG5e-37155
NC_011898:1558208:1576835157683515778571023Clostridium cellulolyticum H10, complete genomecobalamin (vitamin B12) biosynthesis CbiG protein4e-34145
NC_015565:624298:6363696363696374271059Desulfotomaculum carboxydivorans CO-1-SRB chromosome, completecobalamin (vitamin B12) biosynthesis CbiG protein2e-33143
NC_016791:1132451:1140073114007311410951023Clostridium sp. BNL1100 chromosome, complete genomecobalamin biosynthesis protein CbiG2e-32140
NC_015687:1508664:151558415155841516564981Clostridium acetobutylicum DSM 1731 chromosome, complete genomecobalamin biosynthesis protein CbiG6e-32138
NC_003030:1510000:151398315139831514963981Clostridium acetobutylicum ATCC 824, complete genomecobalamin biosynthesis protein CbiG6e-32138
NC_017295:1507956:151339715133971514377981Clostridium acetobutylicum EA 2018 chromosome, complete genomecobalamin biosynthesis protein CbiG6e-32138
NC_009633:74500:9544395443965071065Alkaliphilus metalliredigens QYMF chromosome, complete genomecobalamin (vitamin B12) biosynthesis protein CbiG2e-31137
NC_008593:2250871:2256626225662622576601035Clostridium novyi NT, complete genomecobalamin biosynthesis protein cbiG7e-31134
NC_009253:2927802:2937007293700729380711065Desulfotomaculum reducens MI-1 chromosome, complete genomecobalamin (vitamin B12) biosynthesis protein CbiG8e-31134
NC_021182:1245692:1260602126060212616871086Clostridium pasteurianum BC1, complete genomecobalamin biosynthesis protein CbiG1e-30134
NC_020291:3900046:3921659392165939227171059Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomecobalt-precorrin 5A acetaldehyde-lyase4e-29129
NC_010001:1702350:1717296171729617183511056Clostridium phytofermentans ISDg, complete genomecobalamin (vitamin B12) biosynthesis CbiG protein4e-28125
NC_016627:4203775:4221290422129042223271038Clostridium clariflavum DSM 19732 chromosome, complete genomecobalamin biosynthesis protein CbiG1e-27124
NC_013517:1055854:109864410986441099642999Sebaldella termitidis ATCC 33386, complete genomecobalamin (vitamin B12) biosynthesis CbiG protein2e-26120
NC_012491:1263469:1278846127884612799911146Brevibacillus brevis NBRC 100599, complete genomeCbiG protein7e-25115
NC_010382:3350816:3360010336001033611311122Lysinibacillus sphaericus C3-41, complete genomeprotein cbiG2e-24113
NC_016641:1085862:1092036109203610931241089Paenibacillus terrae HPL-003 chromosome, complete genomeprotein cbig5e-24112
NC_019903:1058657:1066730106673010678331104Desulfitobacterium dichloroeliminans LMG P-21439 chromosome,cobalamin biosynthesis protein CbiG3e-23109
NC_014622:5315500:5323140532314053242281089Paenibacillus polymyxa SC2 chromosome, complete genomeprotein cbig4e-23109
NC_015574:2501869:250186925018692502861993Methanobacterium sp. SWAN-1 chromosome, complete genomecobalamin (vitamin B12) biosynthesis CbiG protein1e-22107
NC_021171:415771:4271714271714282921122Bacillus sp. 1NLA3E, complete genomecobalamin biosynthesis protein CbiG1e-22107
NC_014483:4957315:4964850496485049659381089Paenibacillus polymyxa E681 chromosome, complete genomeCobalamin biosynthesis protein CbiG5e-22105
NC_011026:2624775:2648727264872726506161890Chloroherpeton thalassium ATCC 35110, complete genomeprecorrin-4 C11-methyltransferase9e-22104
NC_008148:672608:6777946777946794791686Rubrobacter xylanophilus DSM 9941, complete genomeprecorrin-3B C17-methyltransferase4e-21102
NC_016776:2956444:2956444295644429582431800Bacteroides fragilis 638R, complete genomeputative bifunctional CbiF/CbiG cobalamin biosynthesis protein2e-1894
NC_006138:225832:2390322390322400361005Desulfotalea psychrophila LSv54, complete genomecobalamin biosynthesis protein (CbiG)2e-1584
NC_011059:1391734:1405703140570314075831881Prosthecochloris aestuarii DSM 271, complete genomeprecorrin-4 C11-methyltransferase2e-1583.6
NC_014166:2149984:2157426215742621584421017Arcobacter nitrofigilis DSM 7299 chromosome, complete genomecobalamin (vitamin B12) biosynthesis protein CbiG2e-1480.1
NC_015656:2795784:2799166279916628010701905Frankia symbiont of Datisca glomerata chromosome, complete genomeprecorrin-3B C17-methyltransferase7e-0962
NC_011601:2139188:218093321809332181430498Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomehypothetical protein2e-0653.9
NC_020829:636773:6541906541906558391650Pseudomonas denitrificans ATCC 13867, complete genomeprecorrin-3B C17-methyltransferase2e-0653.5