Pre_GI: BLASTP Hits

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Query: NC_004851:157675:165663 Shigella flexneri 2a str. 301 plasmid pCP301, complete sequence

Start: 165663, End: 165878, Length: 216

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated in 1984 from a patient in Beijing, China. Causes enteric disease. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. Transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017319:155958:164325164325164540216Shigella flexneri 2002017 plasmid pSFxv_1, complete sequencehypothetical protein2e-35147
NC_007414:56508:627376273763291555Escherichia coli O157:H7 EDL933 plasmid pO157, complete sequencehypothetical protein2e-26117
NC_002128:35000:401624016240716555Escherichia coli O157:H7 str. Sakai plasmid pO157, completehypothetical protein2e-26117
NC_009787:17344:173441734417778435Escherichia coli E24377A plasmid pETEC_35, complete sequencehypothetical protein5e-25112
NC_009378:106193:131791131791132210420Yersinia pestis Pestoides F plasmid MT, complete sequencehypothetical protein1e-1168.6
NC_008118:56777:956999569996118420Yersinia pestis Nepal516 plasmid pMT, complete sequencehypothetical protein1e-1168.6
NC_010158:92819:109351109351109770420Yersinia pestis Angola plasmid pMT-pPCP, complete sequence1e-1168.6
NC_004838:51013:675576755767976420Yersinia pestis KIM plasmid pMT-1, complete sequencehypothetical protein1e-1168.6
NC_005815:61148:887468874689237492Yersinia pestis biovar Microtus str. 91001 plasmid pMT1, completehypothetical protein1e-1168.6