Pre_GI: BLASTP Hits

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Query: NC_004578:934867:944512 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 944512, End: 945756, Length: 1245

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004578:934867:9432069432069444591254Pseudomonas syringae pv. tomato str. DC3000, complete genomenikkomycin biosynthesis domain protein5e-124444
NC_012214:124337:1341971341971354201224Erwinia pyrifoliae Ep1/96, complete genomeHsvC protein5e-91335
NC_015381:1318818:1342320134232013436371318Burkholderia gladioli BSR3 chromosome 1, complete sequence2e-1893.6
NC_013440:8405719:8416192841619284174181227Haliangium ochraceum DSM 14365, complete genomeATP-dependent carboxylate-amine ligase domain protein ATP-grasp6e-1789
NC_008618:1487000:1492785149278514939721188Bifidobacterium adolescentis ATCC 15703, complete genomehypothetical protein6e-1789
NC_013714:1463143:1470566147056614717981233Bifidobacterium dentium Bd1, complete genomeATP-dependent carboxylate-amine ligase7e-1789
NC_013440:8405719:8418758841875884199901233Haliangium ochraceum DSM 14365, complete genomeATP-dependent carboxylate-amine ligase domain protein ATP-grasp4e-1479.7
NC_014500:4883794:4902076490207649032841209Dickeya dadantii 3937 chromosome, complete genomeNikkomycin biosynthesis protein, carboxylase2e-1274.3
NC_014479:188009:2038432038432050691227Bacillus subtilis subsp. spizizenii str. W23 chromosome, completeputative amino acid ligase of ATP-grasp superfamily4e-1272.8
NC_014206:1202907:1211656121165612128791224Geobacillus sp. C56-T3 chromosome, complete genomehypothetical protein5e-1272.4
NC_013093:2230171:2245939224593922472101272Actinosynnema mirum DSM 43827, complete genomeATP-dependent carboxylate-amine ligase domain protein ATP-grasp1e-1171.2
NC_006270:204000:2051442051442063611218Bacillus licheniformis ATCC 14580, complete genomehypothetical protein4e-1169.7
NC_006322:203932:2049512049512061681218Bacillus licheniformis ATCC 14580, complete genomehypothetical protein4e-1169.7
NC_013961:3269368:3288300328830032894661167Erwinia amylovora, complete genomeCarbamoyl-phosphate synthase large chain3e-1169.7
NC_013971:465318:4819164819164830821167Erwinia amylovora ATCC 49946 chromosome, complete genomehypothetical protein3e-1169.7
NC_016631:2051475:2054459205445920556611203Granulicella mallensis MP5ACTX8 chromosome, complete genomeATP-dependent carboxylate-amine ligase domain-containing protein3e-0963.2
NC_017219:538864:5664635664635677041242Bifidobacterium longum subsp. infantis ATCC 15697, complete genomehypothetical protein8e-0962
NC_011593:533884:5666705666705679111242Bifidobacterium longum subsp. infantis ATCC 15697 chromosome,hypothetical protein8e-0962
NC_008268:4669530:4676465467646546777241260Rhodococcus sp. RHA1, complete genomehypothetical protein1e-0861.6
NC_013956:1762171:1771655177165517728871233Pantoea ananatis LMG 20103 chromosome, complete genomehypothetical protein1e-0861.6
NC_008278:5053899:5078086507808650793511266Frankia alni ACN14a, complete genomePutative biotin carboxylase2e-0860.5
NC_003888:7659639:7662638766263876638551218Streptomyces coelicolor A3(2), complete genomecarboxylase2e-0860.5
NC_013410:2519441:2544337254433725455601224Fibrobacter succinogenes subsp. succinogenes S85 chromosome,phosphoribosylglycinamide synthetase5e-0859.3
NC_014500:4049384:4060026406002640612251200Dickeya dadantii 3937 chromosome, complete genomeargininosuccinate lyase5e-0859.3
NC_014166:2959688:2970841297084129719501110Arcobacter nitrofigilis DSM 7299 chromosome, complete genomeATP-dependent carboxylate-amine ligase domain-containing protein1e-0655.1
NC_009707:1338742:1339815133981513410531239Campylobacter jejuni subsp. doylei 269.97 chromosome, completehypothetical protein2e-0654.3
NC_012522:4692260:4695859469585946971181260Rhodococcus opacus B4, complete genomehypothetical protein2e-0653.9
NC_015566:3417951:3435925343592534371451221Serratia sp. AS12 chromosome, complete genomeATP-dependent carboxylate-amine ligase domain-containing protein ATP-grasp4e-0653.1
NC_015381:1318818:1341068134106813423061239Burkholderia gladioli BSR3 chromosome 1, complete sequencehypothetical protein4e-0653.1