Pre_GI: BLASTP Hits

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Query: NC_004578:934867:943206 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 943206, End: 944459, Length: 1254

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004578:934867:9445129445129457561245Pseudomonas syringae pv. tomato str. DC3000, complete genomehypothetical protein4e-129461
NC_012214:124337:1341971341971354201224Erwinia pyrifoliae Ep1/96, complete genomeHsvC protein2e-92339
NC_015381:1318818:1342320134232013436371318Burkholderia gladioli BSR3 chromosome 1, complete sequence1e-21104
NC_016631:2051475:2054459205445920556611203Granulicella mallensis MP5ACTX8 chromosome, complete genomeATP-dependent carboxylate-amine ligase domain-containing protein9e-1685.1
NC_013714:1463143:1470566147056614717981233Bifidobacterium dentium Bd1, complete genomeATP-dependent carboxylate-amine ligase1e-1584.3
NC_008618:1487000:1492785149278514939721188Bifidobacterium adolescentis ATCC 15703, complete genomehypothetical protein1e-1584.3
NC_013440:8405719:8416192841619284174181227Haliangium ochraceum DSM 14365, complete genomeATP-dependent carboxylate-amine ligase domain protein ATP-grasp2e-1584
NC_014500:4883794:4902076490207649032841209Dickeya dadantii 3937 chromosome, complete genomeNikkomycin biosynthesis protein, carboxylase1e-1480.9
NC_013440:8405719:8418758841875884199901233Haliangium ochraceum DSM 14365, complete genomeATP-dependent carboxylate-amine ligase domain protein ATP-grasp2e-1480.5
NC_017219:538864:5664635664635677041242Bifidobacterium longum subsp. infantis ATCC 15697, complete genomehypothetical protein2e-1377
NC_011593:533884:5666705666705679111242Bifidobacterium longum subsp. infantis ATCC 15697 chromosome,hypothetical protein2e-1377
NC_015566:3417951:3435925343592534371451221Serratia sp. AS12 chromosome, complete genomeATP-dependent carboxylate-amine ligase domain-containing protein ATP-grasp7e-1375.5
NC_008278:5053899:5078086507808650793511266Frankia alni ACN14a, complete genomePutative biotin carboxylase3e-1273.2
NC_008268:4669530:4676465467646546777241260Rhodococcus sp. RHA1, complete genomehypothetical protein9e-1271.6
NC_012522:4692260:4695859469585946971181260Rhodococcus opacus B4, complete genomehypothetical protein1e-1068.2
NC_013971:465318:4819164819164830821167Erwinia amylovora ATCC 49946 chromosome, complete genomehypothetical protein2e-1067
NC_013961:3269368:3288300328830032894661167Erwinia amylovora, complete genomeCarbamoyl-phosphate synthase large chain2e-1067
NC_013093:2230171:2245939224593922472101272Actinosynnema mirum DSM 43827, complete genomeATP-dependent carboxylate-amine ligase domain protein ATP-grasp4e-1066.2
NC_014479:188009:2038432038432050691227Bacillus subtilis subsp. spizizenii str. W23 chromosome, completeputative amino acid ligase of ATP-grasp superfamily1e-0965.1
NC_003888:7659639:7662638766263876638551218Streptomyces coelicolor A3(2), complete genomecarboxylase5e-0962.8
NC_013956:1762171:1771655177165517728871233Pantoea ananatis LMG 20103 chromosome, complete genomehypothetical protein2e-0860.8
NC_006322:203932:2049512049512061681218Bacillus licheniformis ATCC 14580, complete genomehypothetical protein4e-0859.7
NC_006270:204000:2051442051442063611218Bacillus licheniformis ATCC 14580, complete genomehypothetical protein4e-0859.7
NC_015381:1318818:1341068134106813423061239Burkholderia gladioli BSR3 chromosome 1, complete sequencehypothetical protein2e-0653.9
NC_020209:397376:4143374143374156291293Pseudomonas poae RE*1-1-14, complete genomehypothetical protein3e-0653.1
NC_013410:2519441:2544337254433725455601224Fibrobacter succinogenes subsp. succinogenes S85 chromosome,phosphoribosylglycinamide synthetase4e-0653.1
NC_011831:2728932:2747266274726627485221257Chloroflexus aggregans DSM 9485, complete genomephosphoribosylglycinamide synthetase9e-0652