Pre_GI: BLASTP Hits

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Query: NC_004578:6334735:6337734 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 6337734, End: 6338684, Length: 951

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009952:526456:547953547953548888936Dinoroseobacter shibae DFL 12, complete genomeABC-type cobalamin/Fe3+-siderophores transport system protein1e-103376
NC_020181:527592:533968533968534924957Enterobacter aerogenes EA1509E, complete genomeABC transporter (iron.B12.siderophore.hemin) , periplasmic substrate-binding component1e-75283
NC_006625:1:273827383694957Klebsiella pneumoniae NTUH-K2044 plasmid pK2044, complete sequencehypothetical protein1e-74280
NC_009792:808332:814069814069815052984Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein3e-74278
NC_015563:3401867:3425797342579734268491053Delftia sp. Cs1-4 chromosome, complete genomeABC transporter periplasmic protein3e-70265
NC_013446:2130021:2131154213115421322151062Comamonas testosteroni CNB-2, complete genomeIron (III) ABC transporter ATP-binding protein3e-68258
NC_019673:7951493:796176479617647962744981Saccharothrix espanaensis DSM 44229 complete genomeABC-type iron transporter, substrate-binding lipoprotein2e-61235
NC_016641:4151403:4154494415449441555131020Paenibacillus terrae HPL-003 chromosome, complete genomeABC transporter substrate-binding protein1e-50200
NC_018515:570366:572264572264573241978Desulfosporosinus meridiei DSM 13257 chromosome, complete genomeFe3+-hydroxamate ABC transporter periplasmic protein5e-34145
NC_013093:3068486:3105498310549831065681071Actinosynnema mirum DSM 43827, complete genomeperiplasmic binding protein4e-33142
NC_013159:1807599:182841918284191829417999Saccharomonospora viridis DSM 43017, complete genomeABC-type Fe3+-hydroxamate transport system, periplasmic component2e-31136
NC_010723:1465097:1489151148915114901761026Clostridium botulinum E3 str. Alaska E43, complete genomeputative iron chelate uptake ABC transporter, solute-binding protein2e-28126
NC_010674:1496500:1522720152272015237421023Clostridium botulinum B str. Eklund 17B, complete genomeputative iron chelate uptake ABC transporter, solute-binding protein6e-27121
NC_013093:4580448:4591490459149045925091020Actinosynnema mirum DSM 43827, complete genomeperiplasmic binding protein1e-25117
NC_013729:4835452:4835452483545248364801029Kribbella flavida DSM 17836, complete genomeperiplasmic binding protein3e-25115
NC_014158:1651326:167436016743601675325966Tsukamurella paurometabola DSM 20162 chromosome, complete genomeperiplasmic binding protein1e-24114
NC_010725:4511939:451685945168594517836978Methylobacterium populi BJ001, complete genomeperiplasmic binding protein2e-24113
NC_013093:4580448:4595289459528945964191131Actinosynnema mirum DSM 43827, complete genomeperiplasmic binding protein6e-1995.1
NC_008687:133728:1555571555571565671011Paracoccus denitrificans PD1222 chromosome 2, complete sequenceperiplasmic binding protein3e-1789.7
NC_016023:1658377:1672562167256216735691008Bacillus coagulans 36D1 chromosome, complete genomeABC transporter periplasmic protein4e-1789
NC_017317:51428:654856548566483999Corynebacterium ulcerans 809 chromosome, complete genomezinc ABC transportersubstrate-binding protein4e-1582.4
NC_015859:2726414:2742537274253727435681032Corynebacterium variabile DSM 44702 chromosome, complete genomezinc ABC transport system substrate-binding protein3e-1479.3
NC_014550:3377834:3393444339344433944751032Arthrobacter arilaitensis Re117, complete genomeiron-siderophore ABC transporter substrate-binding protein4e-1479.3
NC_010723:575254:5752545752545762671014Clostridium botulinum E3 str. Alaska E43, complete genomeputative iron compound ABC transporter, periplasmic iron compound-binding protein2e-1376.6
NC_019940:3089884:308988430898843090873990Thioflavicoccus mobilis 8321 chromosome, complete genomeFe3+-hydroxamate ABC transporter substrate-binding protein3e-1376.3
NC_014958:3346500:336923533692353370122888Deinococcus maricopensis DSM 21211 chromosome, complete genomeABC transporter periplasmic subunit7e-1374.7
NC_014831:1557485:1558876155887615599131038Thermaerobacter marianensis DSM 12885 chromosome, complete genomeperiplasmic binding protein1e-1274.3
NC_016641:3173250:3180233318023331812371005Paenibacillus terrae HPL-003 chromosome, complete genomeFe3+-hydroxamate ABC transporter periplasmic protein3e-1273.2
NC_014622:1514416:1520936152093615219431008Paenibacillus polymyxa SC2 chromosome, complete genomeABC transporter substrate-binding protein4e-1272.4
NC_015391:448833:4641584641584651981041Carnobacterium sp. 17-4 chromosome, complete genomeputative lipoprotein binding vitamin B127e-1271.6
NC_014483:1376500:1383180138318013841871008Paenibacillus polymyxa E681 chromosome, complete genomeABC-type Fe3+-hydroxamate transport system, periplasmic component1e-1170.5
NC_015416:1832759:1836576183657618376491074Methanosaeta concilii GP-6 chromosome, complete genomeperiplasmic binding protein2e-1170.1
NC_008010:105665:126435126435127304870Deinococcus geothermalis DSM 11300 plasmid 1, complete sequenceperiplasmic binding protein8e-1168.2
NC_016884:3219030:322258932225893223530942Sulfobacillus acidophilus DSM 10332 chromosome, complete genomeABC transporter periplasmic protein5e-1065.5
NC_015757:2343193:234677323467732347693921Sulfobacillus acidophilus TPY chromosome, complete genomeperiplasmic binding protein6e-1065.1
NC_015275:820723:8322618322618332621002Clostridium lentocellum DSM 5427 chromosome, complete genomeABC-type transporter, periplasmic subunit4e-0962.4
NC_001263:2574755:2595145259514525961521008Deinococcus radiodurans R1 chromosome 1, complete sequenceiron ABC transporter, periplasmic substrate-binding protein, putative4e-0962.4
NC_020302:2116468:2130878213087821318971020Corynebacterium halotolerans YIM 70093 = DSM 44683, completeputative ABC transporter substrate-binding protein7e-0961.6
NC_014246:373247:381221381221382045825Mobiluncus curtisii ATCC 43063 chromosome, complete genomeiron ABC transporter ATP-binding protein9e-0961.2
NC_016582:1707756:172890317289031729832930Streptomyces bingchenggensis BCW-1 chromosome, complete genomeperiplasmic binding protein3e-0859.7
NC_013665:1766158:1795446179544617964591014Methanocella paludicola SANAE, complete genomeputative iron compound ABC transporter iron compound binding protein3e-0859.3
NC_015680:21500:5110851108530751968Pyrococcus yayanosii CH1 chromosome, complete genomePeriplasmic binding protein1e-0757.4
NC_008553:1717000:1724924172492417260421119Methanosaeta thermophila PT, complete genomeperiplasmic binding protein2e-0653.1
NC_013922:1855000:186017718601771861070894Natrialba magadii ATCC 43099 chromosome, complete genomeperiplasmic binding protein3e-0653.1
NC_015573:2187688:2205510220551022065471038Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomeABC transporter periplasmic protein4e-0652.4
NC_015416:1872000:1872007187200718731101104Methanosaeta concilii GP-6 chromosome, complete genomeperiplasmic binding protein6e-0652