Pre_GI: BLASTP Hits

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Query: NC_004578:6089958:6092960 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 6092960, End: 6094231, Length: 1272

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007005:5825925:5826616582661658278871272Pseudomonas syringae pv. syringae B728a, complete genomehypothetical protein0744
NC_009439:4661102:4676240467624046774781239Pseudomonas mendocina ymp, complete genomehypothetical protein2e-144512
NC_008027:5533311:5536410553641055376451236Pseudomonas entomophila L48, complete genomehypothetical protein8e-139493
NC_017986:2985514:3001589300158930027941206Pseudomonas putida ND6 chromosome, complete genomehypothetical protein5e-134478
NC_016830:381049:3976983976983989301233Pseudomonas fluorescens F113 chromosome, complete genomeSAM-dependent methyltransferase9e-134477
NC_020829:5174354:5192864519286451940841221Pseudomonas denitrificans ATCC 13867, complete genomehypothetical protein9e-130463
NC_009434:281474:2977832977832989851203Pseudomonas stutzeri A1501, complete genomeSAM-dependent methyltransferase1e-124446
NC_010501:5442000:5445420544542054466251206Pseudomonas putida W619, complete genomehypothetical protein1e-121436
NC_016901:1885694:1901573190157319030061434Shewanella baltica OS678 chromosome, complete genomehypothetical protein8e-63241
NC_020126:3479500:3485944348594434871581215Myxococcus stipitatus DSM 14675, complete genomehypothetical protein6e-1375.5
NC_014623:1600360:1617700161770016189141215Stigmatella aurantiaca DW4/3-1 chromosome, complete genomeregulator of chromosome condensation, rcc15e-0859.3