Pre_GI: BLASTP Hits

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Query: NC_004578:4781326:4801709 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 4801709, End: 4802299, Length: 591

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008390:2156188:217708321770832177646564Burkholderia cepacia AMMD chromosome 1, complete sequencetranscriptional regulator, TetR family8e-48189
NC_008543:90312:107603107603108166564Burkholderia cenocepacia HI2424 chromosome 2, complete sequencetranscriptional regulator, TetR family1e-38159
NC_008061:2153495:216160721616072162170564Burkholderia cenocepacia AU 1054 chromosome 2, complete sequencetranscriptional regulator, TetR family1e-38159
NC_008545:115292:127562127562128125564Burkholderia cenocepacia HI2424 plasmid 1, complete sequencetranscriptional regulator, TetR family2e-38158
NC_010515:1375091:140668514066851407248564Burkholderia cenocepacia MC0-3 chromosome 2, complete sequencetranscriptional regulator, TetR family6e-37153
NC_004578:4781326:480645848064584807027570Pseudomonas syringae pv. tomato str. DC3000, complete genometranscriptional regulator, TetR family2e-35148
NC_012791:2233098:224178422417842242434651Variovorax paradoxus S110 chromosome 1, complete genometranscriptional regulator, TetR family6e-34143
NC_010552:335989:345128345128345691564Burkholderia ambifaria MC40-6 chromosome 2, complete sequencetranscriptional regulator, TetR family7e-31133
NC_009925:2240871:225482422548242255411588Acaryochloris marina MBIC11017, complete genometranscriptional regulator, TetR family1e-1996.3
NC_008750:2332000:234367323436732344257585Shewanella sp. W3-18-1, complete genometranscriptional regulator, TetR family1e-1996.3
NC_014217:716500:720611720611721195585Starkeya novella DSM 506 chromosome, complete genometranscriptional regulator, TetR family4e-1890.9
NC_008740:443274:483508483508484074567Marinobacter aquaeolei VT8, complete genometranscriptional regulator, TetR family5e-1890.9
NC_016147:1672482:167954316795431680130588Pseudoxanthomonas spadix BD-a59 chromosome, complete genomeTetR family transcriptional regulator2e-1789
NC_010557:207846:223133223133223699567Burkholderia ambifaria MC40-6 chromosome 3, complete sequencetranscriptional regulator, TetR family3e-1788.2
NC_011071:1877500:190017419001741900761588Stenotrophomonas maltophilia R551-3, complete genometranscriptional regulator, TetR family1e-1686.3
NC_002678:3701500:370335737033573703944588Mesorhizobium loti MAFF303099, complete genometranscriptional regulator (tetR-family)1e-1685.9
NC_020064:3998715:403922240392224039806585Serratia marcescens FGI94, complete genometranscriptional regulator8e-1683.6
NC_011887:72364:813868138681883498Methylobacterium nodulans ORS 2060 plasmid pMNOD02, completetranscriptional regulator, TetR family2e-1582
NC_009659:1129066:114502411450241145587564Janthinobacterium sp. Marseille chromosome, complete genomeTetR family transcriptional regulator9e-1580.1
NC_009659:1024201:104447610444761045036561Janthinobacterium sp. Marseille chromosome, complete genomeTetR family transcriptional regulator3e-1478.6
NC_016514:1183356:118976111897611190348588Enterobacter cloacae EcWSU1 chromosome, complete genomeTetR family transcriptional Regulator7e-1477
NC_014258:42262:438174381744380564Pantoea vagans C9-1 plasmid pPag3, complete sequenceHTH-type transcriptional regulator1e-1376.3
NC_017249:263873:265374265374265943570Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein1e-1375.9
NC_008527:125723:131535131535132074540Lactococcus lactis subsp. cremoris SK11, complete genomeTranscriptional regulator3e-1375.1
NC_011751:3453683:346686434668643467424561Escherichia coli UMN026 chromosome, complete genomeputative transcriptional regulator7e-1270.5
NC_004431:3409389:344279834427983443358561Escherichia coli CFT073, complete genomehypothetical protein7e-1270.5
NC_010625:1370462:139744613974461398036591Burkholderia phymatum STM815 plasmid pBPHY01, complete sequencetranscriptional regulator, TetR family6e-1167
NC_013956:1762171:178770317877031788275573Pantoea ananatis LMG 20103 chromosome, complete genomeYdhM1e-1066.6
NC_011001:568970:568970568970569545576Burkholderia cenocepacia J2315 chromosome 2, complete sequenceTetR family regulatory protein6e-1063.9
NC_013422:1732677:174532717453271745968642Halothiobacillus neapolitanus c2, complete genometranscriptional regulator, TetR family5e-0857.4
NC_010002:4256651:428231342823134282894582Delftia acidovorans SPH-1, complete genometranscriptional regulator, TetR family4e-0754.7