Pre_GI: BLASTP Hits

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Query: NC_004578:4061372:4074346 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 4074346, End: 4075947, Length: 1602

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004578:4869673:4873769487376948755891821Pseudomonas syringae pv. tomato str. DC3000, complete genomehypothetical protein3e-151535
NC_016616:1182125:1196083119608311979931911Dechlorosoma suillum PS chromosome, complete genomephage integrase family protein2e-40167
NC_008740:1357312:137514413751441375854711Marinobacter aquaeolei VT8, complete genomephage integrase family protein6e-34145
NC_010087:376918:4203174203174222691953Burkholderia multivorans ATCC 17616 chromosome 3, completesite-specific recombinase, phage integrase family protein3e-32140
NC_008740:1357312:1372318137231813734961179Marinobacter aquaeolei VT8, complete genomephage integrase family protein4e-24113
NC_014541:1753776:1766341176634117683742034Ferrimonas balearica DSM 9799 chromosome, complete genomehypothetical protein8e-1272.4
NC_012668:1623350:1631323163132316333502028Vibrio cholerae MJ-1236 chromosome 1, complete sequencehypothetical protein2e-1170.9
NC_012668:1688500:1750926175092617529532028Vibrio cholerae MJ-1236 chromosome 1, complete sequencehypothetical protein2e-1170.9
NC_012668:2258854:2268094226809422701212028Vibrio cholerae MJ-1236 chromosome 1, complete sequencehypothetical protein2e-1170.9
NC_012668:160357:1791201791201803761257Vibrio cholerae MJ-1236 chromosome 1, complete sequencehypothetical protein3e-1170.5
NC_016901:5130147:5138697513869751407482052Shewanella baltica OS678 chromosome, complete genomehypothetical protein4e-1066.6
NC_009997:5188221:5198075519807552001262052Shewanella baltica OS195, complete genomehypothetical protein4e-1066.6
NC_009665:5072413:5080948508094850829992052Shewanella baltica OS185 chromosome, complete genomehypothetical protein4e-1066.6