Pre_GI: BLASTP Hits

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Query: NC_004578:3817330:3832938 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 3832938, End: 3833702, Length: 765

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016830:4999946:501770450177045018549846Pseudomonas fluorescens F113 chromosome, complete genomephage protein U2e-121435
NC_004129:2234851:223742722374272238272846Pseudomonas fluorescens Pf-5, complete genomepyocin R2_PP, tail formation protein4e-116417
NC_017986:4124335:412773441277344128579846Pseudomonas putida ND6 chromosome, complete genomepyocin R2 PP, tail formation protein3e-108390
NC_015733:1976752:198025019802501981095846Pseudomonas putida S16 chromosome, complete genomepyocin R2_PP, tail formation protein3e-107387
NC_017033:1089579:109284410928441093686843Frateuria aurantia DSM 6220 chromosome, complete genomephage protein U2e-68259
NC_015381:3091500:311565431156543116532879Burkholderia gladioli BSR3 chromosome 1, complete sequencePhage P2 GpU family protein5e-36151
NC_015381:2109500:211267021126702113425756Burkholderia gladioli BSR3 chromosome 1, complete sequencePhage P2 GpU family protein2e-35149
NC_008390:2018201:203723820372382038116879Burkholderia cepacia AMMD chromosome 1, complete sequencephage P2 GpU family protein2e-35149
NC_015381:3457784:347469734746973475452756Burkholderia gladioli BSR3 chromosome 1, complete sequencePhage P2 GpU family protein5e-35147
NC_012724:3070386:308492230849223085800879Burkholderia glumae BGR1 chromosome 1, complete genomePhage P2 GpU family protein5e-34144
NC_006576:856014:873361873361874281921Synechococcus elongatus PCC 6301, complete genomehypothetical protein5e-28124
NC_007604:743738:746590746590747510921Synechococcus elongatus PCC 7942, complete genomehypothetical protein5e-28124
NC_012881:2310141:232552323255232325903381Desulfovibrio salexigens DSM 2638, complete genomeP2 GpU family protein5e-1994.7
NC_009832:2211154:223880522388052239263459Serratia proteamaculans 568, complete genomeP2 GpU family protein4e-1478.6
NC_015563:4959843:496628349662834966741459Delftia sp. Cs1-4 chromosome, complete genomeP2 GpU family protein1e-1377
NC_011415:2248417:226432222643222264750429Escherichia coli SE11 chromosome, complete genomehypothetical protein4e-1375.1
NC_003902:3544743:354808035480803548481402Xanthomonas campestris pv. campestris str. ATCC 33913, completephage-related tail protein7e-1374.3
NC_012416:753500:757164757164757580417Wolbachia sp. wRi, complete genometail protein U, putative6e-1271.2
NC_021150:3771860:378625037862503786693444Azotobacter vinelandii CA6, complete genomePhage P2 GpU protein2e-1169.7
NC_012560:3771861:378625137862513786694444Azotobacter vinelandii DJ, complete genomePhage P2 GpU protein2e-1169.7
NC_014323:961825:978063978063978590528Herbaspirillum seropedicae SmR1 chromosome, complete genomebacteriophage P2 phage-related tail U protein7e-1167.8
NC_008781:3508784:351572135157213516170450Polaromonas naphthalenivorans CJ2, complete genomephage P2 GpU family protein7e-1064.3
NC_007963:1552761:156822515682251568668444Chromohalobacter salexigens DSM 3043, complete genomephage P2 GpU8e-1064.3
NC_009801:995396:101492410149241015403480Escherichia coli E24377A, complete genomephage protein gpU8e-0960.8
NC_007613:1353500:137033413703341370822489Shigella boydii Sb227, complete genomeputative tail protein2e-0860.1
NC_016816:674171:678437678437678940504Pantoea ananatis LMG 5342, complete genomeP2 GpU family protein3e-0858.9
NC_015410:2351464:238451223845122384952441Pseudomonas mendocina NK-01 chromosome, complete genomephage P2 GpU protein4e-0858.9
NC_015856:1182974:118820811882081188765558Collimonas fungivorans Ter331 chromosome, complete genomephage p2 GpU2e-0756.2
NC_009436:1466580:148955414895541490039486Enterobacter sp. 638, complete genomephage P2 GpU family protein3e-0755.8
NC_012724:1914740:192413919241391924636498Burkholderia glumae BGR1 chromosome 1, complete genomePhage protein U5e-0755.1
NC_009648:3803622:380478838047883805267480Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeputative prophage tail protein5e-0755.1
NC_010981:468465:481791481791482147357Wolbachia pipientis, complete genomephage tail protein GpU9e-0753.9
NC_014228:3022903:302824430282443028708465Xenorhabdus nematophila ATCC 19061, complete genomehypothetical protein1e-0653.5
NC_012880:2480000:248836524883652488859495Dickeya dadantii Ech703, complete genomeP2 GpU family protein1e-0653.5
NC_010981:1371265:141166214116621412009348Wolbachia pipientis, complete genomephage tail protein GpU3e-0652.4
NC_012779:3016327:302355130235513023979429Edwardsiella ictaluri 93-146, complete genomehypothetical protein4e-0652
NC_002978:549454:552805552805553155351Wolbachia endosymbiont of Drosophila melanogaster, complete genomeprophage P2W3, tail protein U, putative4e-0652
NC_020181:5130513:516738451673845167869486Enterobacter aerogenes EA1509E, complete genomePhage-related tail protein5e-0651.6
NC_006155:2084669:209867720986772099162486Yersinia pseudotuberculosis IP 32953, complete genomeputative phage tail protein1e-0550.8