Pre_GI: BLASTP Hits

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Query: NC_004578:20738:40884 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 40884, End: 41852, Length: 969

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_020209:4768500:479527747952774796248972Pseudomonas poae RE*1-1-14, complete genomehypothetical protein9e-146516
NC_005773:106000:113614113614114579966Pseudomonas syringae pv. phaseolicola 1448A, complete genomeParB-like nuclease8e-142503
NC_007794:561623:571140571140572099960Novosphingobium aromaticivorans DSM 12444, complete genomeRepB plasmid partition8e-84310
NC_008358:2638245:267571126757112676625915Hyphomonas neptunium ATCC 15444, complete genomeParB family protein4e-80298
NC_007494:1:122131221313130918Rhodobacter sphaeroides 2.4.1 chromosome 2, complete sequencehypothetical protein4e-75281
NC_009050:567209:587986587986588903918Rhodobacter sphaeroides ATCC 17029 chromosome 2, complete sequenceRepB plasmid partition1e-74280
NC_004463:925140:946525946525947415891Bradyrhizobium japonicum USDA 110, complete genomehypothetical protein2e-71269
NC_008825:1258500:128726912872691288147879Methylibium petroleiphilum PM1, complete genomeParB-like nuclease5e-64244
NC_008826:170609:169734169734170612879Methylibium petroleiphilum PM1 plasmid RPME01, complete sequenceParB-like nuclease5e-64244
NC_011992:3375929:339160133916013392479879Acidovorax ebreus TPSY, complete genomeRepB plasmid partition5e-63241
NC_019973:6102442:611517261151726116062891Mesorhizobium australicum WSM2073, complete genomeputative transcriptional regulator9e-63240
NC_008825:3161146:317183031718303172708879Methylibium petroleiphilum PM1, complete genomehypothetical protein1e-60233
NC_003306:22228:404954049541397903Agrobacterium tumefaciens str. C58 plasmid AT, complete sequencehypothetical protein1e-58227
NC_003064:22535:408024080241704903Agrobacterium tumefaciens str. C58 plasmid AT, complete sequencehypothetical protein1e-58227
NC_010814:1441327:144552114455211446414894Geobacter lovleyi SZ, complete genomeRepB plasmid partition2e-55216
NC_015381:1:613661367035900Burkholderia gladioli BSR3 chromosome 1, complete sequenceParB-like nuclease2e-49196
NC_009708:915814:928475928475929359885Yersinia pseudotuberculosis IP 31758 chromosome, complete genomeRepB plasmid partitioning protein2e-49196
NC_009436:3117661:312954731295473130440894Enterobacter sp. 638, complete genomeRepB plasmid partition4e-49195
NC_014562:2563466:257431625743162575188873Pantoea vagans C9-1 chromosome, complete genomeplasmid partitioning protein6e-49194
NC_012947:1106000:111253311125331113429897Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeRepB plasmid partition8e-48191
NC_012967:2669182:268136826813682682264897Escherichia coli B str. REL606 chromosome, complete genomehypothetical protein8e-48191
NC_012660:5793200:582430658243065825211906Pseudomonas fluorescens SBW25 chromosome, complete genomeputative plasmid partitioning protein5e-48191
NC_009801:2898426:291040629104062911302897Escherichia coli E24377A, complete genomerepB plasmid partitioning protein2e-47189
NC_016514:3573400:358453535845353585431897Enterobacter cloacae EcWSU1 chromosome, complete genomerepB Plasmid Partition3e-47189
NC_014752:834616:872541872541873440900Neisseria lactamica ST-640, complete genomehypothetical protein5e-36151
NC_011283:4438500:447149244714924472091600Klebsiella pneumoniae 342 chromosome, complete genomehypothetical protein5e-31135
NC_015675:3046852:304685230468523047679828Mesorhizobium opportunistum WSM2075 chromosome, complete genomeRepB plasmid partition6e-0962
NC_011992:3375929:339069333906933391604912Acidovorax ebreus TPSY, complete genomeparB-like partition protein2e-0860.1