Pre_GI: BLASTP Hits

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Query: NC_004337:367687:370473 Shigella flexneri 2a str. 301, complete genome

Start: 370473, End: 370715, Length: 243

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated in 1984 from a patient in Beijing, China. It is similar to pathogenic Escherichia coli except for the more numerous insertion sequences and contains a virulence plasmid (pCP301). Causes enteric disease. Shigella This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017328:385552:388338388338388580243Shigella flexneri 2002017 chromosome, complete genomeexodeoxyribonuclease 7 small subunit1e-38157
NC_008258:401786:404572404572404814243Shigella flexneri 5 str. 8401, complete genomeexonuclease VII, small subunit1e-38157
NC_004741:366822:369608369608369850243Shigella flexneri 2a str. 2457T, complete genomeexodeoxyribonuclease VII small subunit1e-38157
NC_015663:2694373:269715426971542697396243Enterobacter aerogenes KCTC 2190 chromosome, complete genomeexodeoxyribonuclease VII small subunit1e-32138
NC_020181:2714559:274840027484002748642243Enterobacter aerogenes EA1509E, complete genomeExodeoxyribonuclease VII small subunit1e-32138
NC_020829:809457:814787814787815032246Pseudomonas denitrificans ATCC 13867, complete genomeexodeoxyribonuclease VII small subunit5e-1373.2
NC_016745:1257397:127377912737791274027249Oceanimonas sp. GK1 chromosome, complete genomeexodeoxyribonuclease VII small subunit1e-1272
NC_002940:1065246:107821110782111078435225Haemophilus ducreyi 35000HP, complete genomeexodeoxyribonuclease VII small subunit1e-1065.5
NC_016047:2480921:250732525073252507579255Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completeexodeoxyribonuclease VII small subunit1e-1065.1
NC_005773:694990:711513711513711851339Pseudomonas syringae pv. phaseolicola 1448A, complete genomeexodeoxyribonuclease VII, small subunit2e-1064.7
NC_019940:1963000:197668119766811976941261Thioflavicoccus mobilis 8321 chromosome, complete genomeexodeoxyribonuclease VII small subunit2e-1064.3
NC_013422:1755875:180136518013651801694330Halothiobacillus neapolitanus c2, complete genomeexodeoxyribonuclease VII, small subunit3e-1063.9
NC_018876:1061682:108206510820651082397333Methanolobus psychrophilus R15 chromosome, complete genomeexodeoxyribonuclease VII small subunit4e-0960.1
NC_014654:1548194:156275315627531563019267Halanaerobium sp. 'sapolanicus' chromosome, complete genomeexodeoxyribonuclease VII, small subunit5e-0856.6
NC_013889:413909:439417439417439689273Thioalkalivibrio sp. K90mix chromosome, complete genomeexodeoxyribonuclease VII, small subunit1e-0755.1
NC_011146:1429836:145314214531421453369228Geobacter bemidjiensis Bem, complete genomeexodeoxyribonuclease VII, small subunit1e-0755.1
NC_009075:2428248:244875024487502449043294Burkholderia pseudomallei 668 chromosome II, complete sequenceexodeoxyribonuclease VII, small subunit1e-0755.1
NC_006351:2398403:241889724188972419190294Burkholderia pseudomallei K96243 chromosome 2, complete sequenceexodeoxyribonuclease VII small subunit1e-0755.1
NC_018645:2301705:231976223197622319989228Desulfobacula toluolica Tol2, complete genomeexodeoxyribonuclease VII, small subunit XseB2e-0754.3
NC_013939:913890:946244946244946474231Deferribacter desulfuricans SSM1, complete genomeexodeoxyribonuclease VII, small subunit3e-0650.8
NC_017059:1727095:174326117432611743536276Rhodospirillum photometricum DSM 122, complete genomeExodeoxyribonuclease VII small subunit4e-0650.1
NC_013517:2607043:260791526079152608136222Sebaldella termitidis ATCC 33386, complete genomeExonuclease VII small subunit6e-0649.7