Pre_GI: BLASTP Hits

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Query: NC_004337:3590323:3765298 Shigella flexneri 2a str. 301, complete genome

Start: 3765298, End: 3766155, Length: 858

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated in 1984 from a patient in Beijing, China. It is similar to pathogenic Escherichia coli except for the more numerous insertion sequences and contains a virulence plasmid (pCP301). Causes enteric disease. Shigella This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017328:3794105:379753837975383798410873Shigella flexneri 2002017 chromosome, complete genomeInvolved in lipopolysaccharide biosynthesis1e-168592
NC_008258:3995553:401217740121774013049873Shigella flexneri 5 str. 8401, complete genomeHtrL1e-168592
NC_004337:3761865:376529837652983766155858Shigella flexneri 2a str. 301, complete genomeinvolved in lipopolysaccharide biosynthesis2e-168591
NC_011751:4251296:425507642550764255933858Escherichia coli UMN026 chromosome, complete genomehypothetical protein2e-167588
NC_011745:4226186:422996542299654230822858Escherichia coli ED1a chromosome, complete genomehypothetical protein5e-167586
NC_013008:4595043:459880445988044599661858Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein2e-166585
NC_011353:4639002:464276346427634643620858Escherichia coli O157:H7 str. EC4115 chromosome, complete genomehypothetical protein2e-166585
NC_011748:4167043:417082241708224171679858Escherichia coli 55989, complete genomehypothetical protein2e-166585
AP010958:4668181:468408346840834684940858Escherichia coli O103:H2 str. 12009 DNA, complete genomeconserved predicted protein2e-166585
CU928145:4167043:417082241708224171679858Escherichia coli 55989 chromosome, complete genomeconserved hypothetical protein2e-166585
NC_013353:4668181:468408346840834684940858Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein2e-166585
NC_013361:4991020:500692250069225007779858Escherichia coli O26:H11 str. 11368 chromosome, complete genomehypothetical protein2e-166585
NC_013364:4460500:446320144632014464058858Escherichia coli O111:H- str. 11128, complete genomehypothetical protein2e-166585
NC_002655:4606000:460864146086414609513873Escherichia coli O157:H7 EDL933, complete genomeinvolved in lipopolysaccharide biosynthesis9e-167585
NC_002695:4537000:453965945396594540531873Escherichia coli O157:H7 str. Sakai, complete genomeinvolved in lipopolysaccharide biosynthesis9e-167585
NC_011415:4040211:404399040439904044862873Escherichia coli SE11 chromosome, complete genomehypothetical protein9e-167585
NC_013941:4427000:442960344296034430475873Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeInvolved in lipopolysaccharide biosynthesis9e-167585
NC_000913:3786124:379084937908493791706858Escherichia coli K12, complete genomehypothetical protein7e-166582
AC_000091:3827856:384673238467323847589858Escherichia coli W3110 DNA, complete genomehypothetical protein7e-166582
NC_010473:3883701:388842638884263889283858Escherichia coli str. K-12 substr. DH10B, complete genomehypothetical protein7e-166582
NC_012759:3675396:367917536791753680032858Escherichia coli BW2952 chromosome, complete genomehypothetical protein7e-166582
NC_013416:386301:391630391630392493864Aggregatibacter actinomycetemcomitans D11S-1, complete genomehypothetical protein7e-69260
NC_016513:689689:695024695024695770747Aggregatibacter actinomycetemcomitans ANH9381 chromosome, completeprotein HtrL4e-62238
NC_017280:1075435:109146110914611092420960Campylobacter jejuni subsp. jejuni M1 chromosome, complete genomeTgh0033e-1995.5
NC_018720:2097694:210802121080212108926906Bifidobacterium asteroides PRL2011 chromosome, complete genomehypothetical protein2e-1479.7