Pre_GI: BLASTP Hits

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Query: NC_004337:3049118:3096690 Shigella flexneri 2a str. 301, complete genome

Start: 3096690, End: 3097067, Length: 378

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated in 1984 from a patient in Beijing, China. It is similar to pathogenic Escherichia coli except for the more numerous insertion sequences and contains a virulence plasmid (pCP301). Causes enteric disease. Shigella This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017328:3088907:313639531363953136772378Shigella flexneri 2002017 chromosome, complete genomeIntergenic-region protein2e-59226
NC_004741:3041294:308751730875173087894378Shigella flexneri 2a str. 2457T, complete genomeputative structural protein2e-59226
NC_007946:1119000:113986211398621140329468Escherichia coli UTI89, complete genomeintergenic-region protein1e-56218
NC_013361:3313284:333105233310523331459408Escherichia coli O26:H11 str. 11368 chromosome, complete genomehypothetical protein4e-56216
NC_008253:3161311:317424031742403174668429Escherichia coli 536, complete genomehypothetical protein YeeU6e-56215
NC_008253:4817864:483538448353844835752369Escherichia coli 536, complete genomehypothetical protein YeeU8e-56215
NC_007946:4875997:489488648948864895254369Escherichia coli UTI89, complete genomehypothetical protein8e-56215
NC_011750:4390000:441278444127844413152369Escherichia coli IAI39 chromosome, complete genomeCP4-44 prophage YeeV-YeeU toxin-antitoxin system toxin6e-55212
NC_011745:3405520:342460634246063424974369Escherichia coli ED1a chromosome, complete genomeCP4-44 prophage YeeV-YeeU toxin-antitoxin system toxin3e-53206
NC_013716:5201097:522075652207565221124369Citrobacter rodentium ICC168, complete genomehypothetical protein3e-53206
NC_008253:334467:358381358381358749369Escherichia coli 536, complete genomehypothetical protein YeeU4e-53206
NC_004431:4319152:433954443395444339969426Escherichia coli CFT073, complete genomeHypothetical protein yeeU1e-52204
NC_013361:5580741:558166455816645582032369Escherichia coli O26:H11 str. 11368 chromosome, complete genomehypothetical protein2e-52204
NC_011745:5114500:511680451168045117172369Escherichia coli ED1a chromosome, complete genomeCP4-44 prophage YeeV-YeeU toxin-antitoxin system toxin2e-52204
AP010958:3669500:367192836719283672302375Escherichia coli O103:H2 str. 12009 DNA, complete genomehypothetical protein4e-52202
NC_013353:3669500:367192836719283672302375Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein4e-52202
NC_009801:4882684:488525648852564885624369Escherichia coli E24377A, complete genomehypothetical protein2e-46184
NC_011083:4547825:456558145655814565874294Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,hypothetical protein3e-40163
NC_020181:5130513:513235751323575132701345Enterobacter aerogenes EA1509E, complete genomeYeeU protein (antitoxin to YeeV)3e-38156
NC_013353:5272863:528956152895615289926366Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein3e-35146
AP010958:5272863:528956152895615289926366Escherichia coli O103:H2 str. 12009 DNA, complete genomehypothetical protein3e-35146
NC_016816:1137904:114897311489731149338366Pantoea ananatis LMG 5342, complete genomeYagB/YeeU/YfjZ family protein2e-34144
NC_011283:4966471:498386149838614984217357Klebsiella pneumoniae 342 chromosome, complete genomehypothetical protein6e-34142
NC_016902:4236680:423846542384654238800336Escherichia coli KO11FL chromosome, complete genomeYagBYeeUYfjZ family protein3e-33140
CP002516:4236680:423846542384654238800336Escherichia coli KO11, complete genomeYagBYeeUYfjZ family protein3e-33140
NC_016902:44744:480834808348448366Escherichia coli KO11FL chromosome, complete genomeYagBYeeUYfjZ family protein2e-32137
CP002516:44744:480834808348448366Escherichia coli KO11, complete genomeYagBYeeUYfjZ family protein2e-32137
CP002185:4035502:405762540576254057990366Escherichia coli W, complete genomehypothetical protein2e-32137
NC_020260:603796:619251619251619574324Cronobacter sakazakii Sp291, complete genomehypothetical protein3e-32137
NC_011415:308825:327267327267327608342Escherichia coli SE11 chromosome, complete genomehypothetical protein8e-31132
NC_009832:1946401:194809419480941948429336Serratia proteamaculans 568, complete genomeYagBYeeUYfjZ family protein5e-31132
NC_009436:522649:542639542639542962324Enterobacter sp. 638, complete genomehypothetical protein5e-30129
NC_015663:1:330153301533347333Enterobacter aerogenes KCTC 2190 chromosome, complete genomehypothetical protein2e-29127
NC_010498:301000:317865317865318182318Escherichia coli SMS-3-5, complete genomeputative antitoxin module of toxin-antitoxin system4e-29126
NC_014618:690056:723982723982724299318Enterobacter cloacae SCF1 chromosome, complete genomeYagBYeeUYfjZ family protein1e-28125
NC_014121:3776902:379295537929553793272318Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completeputative antitoxin module of toxin-antitoxin system4e-28123
NC_020260:882307:893393893393893710318Cronobacter sakazakii Sp291, complete genomeputative antitoxin module of toxin-antitoxin system4e-28123
NC_015663:1356982:137836113783611378687327Enterobacter aerogenes KCTC 2190 chromosome, complete genomeputative antitoxin module of toxin-antitoxin system3e-28123
NC_012759:2633949:266094926609492661266318Escherichia coli BW2952 chromosome, complete genomeCP4-57 prophage; antitoxin of the YpjF-YfjZ toxin-antitoxin system9e-28122
NC_000913:2746886:277513727751372775454318Escherichia coli K12, complete genomeCP4-57 prophage; antitoxin of the YpjF-YfjZ toxin-antitoxin system9e-28122
NC_010473:2839902:286690228669022867219318Escherichia coli str. K-12 substr. DH10B, complete genomeCP4-57 prophage; antitoxin of the YpjF-YfjZ toxin-antitoxin system9e-28122
AC_000091:2747520:277577127757712776088318Escherichia coli W3110 DNA, complete genomeantitoxin of the YpjF-YfjZ toxin-antitoxin system9e-28122
NC_014618:4114004:411962141196214119938318Enterobacter cloacae SCF1 chromosome, complete genomeYagBYeeUYfjZ family protein1e-27121
NC_000913:272071:279609279609279959351Escherichia coli K12, complete genomeCP4-6 prophage; conserved protein5e-27119
AC_000091:273325:279609279609279959351Escherichia coli W3110 DNA, complete genomehypothetical protein5e-27119
NC_010473:247429:253713253713254063351Escherichia coli str. K-12 substr. DH10B, complete genomeCP4-6 prophage; conserved protein5e-27119
NC_013971:3296272:330427733042773304600324Erwinia amylovora ATCC 49946 chromosome, complete genomehypothetical protein4e-26116
NC_013961:441719:466700466700467023324Erwinia amylovora, complete genomeUncharacterized protein yfjZ4e-26116
NC_010634:1342393:134342913434291343818390Yersinia pseudotuberculosis PB1/+, complete genomehypothetical protein3e-24110
NC_013592:446092:467791467791468192402Dickeya dadantii Ech586, complete genomeYagBYeeUYfjZ family protein7e-24109
NC_012917:3241196:326647832664783266813336Pectobacterium carotovorum subsp. carotovorum PC1, complete genomeYagBYeeUYfjZ family protein3e-23107
NC_013592:3263005:327651032765103276842333Dickeya dadantii Ech586, complete genomeYagBYeeUYfjZ family protein4e-23106
NC_008322:2077628:209420120942012094557357Shewanella sp. MR-7, complete genomeYagBYeeUYfjZ family protein4e-1786.7
NC_009901:1516340:152927915292791529620342Shewanella pealeana ATCC 700345, complete genomeYagBYeeUYfjZ family protein5e-1786.3
NC_008577:2115440:212904521290452129401357Shewanella sp. ANA-3 chromosome 1, complete sequenceYagBYeeUYfjZ family protein5e-1786.3
NC_008321:1993541:200983620098362010192357Shewanella sp. MR-4, complete genomeYagBYeeUYfjZ family protein8e-1785.9
NC_013941:4470932:447349444734944473658165Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein1e-0858.5
NC_015224:4386599:440476944047694404912144Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,YagBYeeUYfjZ family protein8e-0752.4