Pre_GI: BLASTP Hits

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Query: NC_004129:5723787:5741341 Pseudomonas fluorescens Pf-5, complete genome

Start: 5741341, End: 5742471, Length: 1131

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010814:1441327:1456119145611914572341116Geobacter lovleyi SZ, complete genomehypothetical protein2e-59229
NC_010688:1192410:1201695120169512028761182Xanthomonas campestris pv. campestris, complete genomehypothetical protein3e-56219
NC_009656:4527457:4583766458376645847881023Pseudomonas aeruginosa PA7 chromosome, complete genomenucleoid-associated protein NdpA4e-1995.9
NC_008463:5246954:5259130525913052601461017Pseudomonas aeruginosa UCBPP-PA14, complete genomehypothetical protein1e-1894
NC_018080:5091772:5104886510488651059081023Pseudomonas aeruginosa DK2 chromosome, complete genomenucleoid-associated protein NdpA1e-1791.3
NC_015556:1188500:1218671121867112196781008Pseudomonas fulva 12-X chromosome, complete genomeNucleoid-associated protein ndpA2e-1687.4
NC_007498:1148249:1161344116134411623781035Pelobacter carbinolicus DSM 2380, complete genomeputative nucleoid-associated protein NdpA9e-1581.6
NC_004129:5373886:5384686538468653858011116Pseudomonas fluorescens Pf-5, complete genomenucleoid-associated protein NdpA1e-1480.9
NC_006512:728281:7313987313987324411044Idiomarina loihiensis L2TR, complete genomenucleoid-associated protein NdpA5e-1479
NC_011663:2123388:2142618214261821436461029Shewanella baltica OS223 chromosome, complete genomenucleoid-associated protein NdpA7e-1478.6
NC_008322:2716676:2716676271667627177041029Shewanella sp. MR-7, complete genome37kDa nucleoid-associated protein8e-1478.2
NC_009092:1684467:1697585169758516986161032Shewanella loihica PV-4, complete genome37 kDa nucleoid-associated protein4e-1376.3
NC_005773:1333863:1344087134408713450881002Pseudomonas syringae pv. phaseolicola 1448A, complete genomenucleoid-associated protein NdpA7e-1375.5
NC_007492:3462929:3493847349384734948871041Pseudomonas fluorescens PfO-1, complete genome37kDa nucleoid-associated protein2e-1170.9
NC_005244:37546:406234062341384762Pseudomonas sp. ND6 plasmid pND6-1, complete sequencehypothetical protein7e-1168.6
NC_012912:2800884:2800884280088428018941011Dickeya zeae Ech1591, complete genome37kDa nucleoid-associated protein1e-0757.8
NC_014618:1593360:1607541160754116085451005Enterobacter cloacae SCF1 chromosome, complete genome37kDa nucleoid-associated protein2e-0757.4
NC_005140:960261:969265969265970263999Vibrio vulnificus YJ016 chromosome II, complete sequencenucleoid-associated protein NdpA2e-0757
NC_015566:3622385:3624674362467436256841011Serratia sp. AS12 chromosome, complete genomenucleoid-associated protein ndpA3e-0756.6
NC_010067:660659:6786796786796796861008Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein1e-0654.7
NC_013971:2408522:2411717241171724127211005Erwinia amylovora ATCC 49946 chromosome, complete genomenucleoid-associated protein2e-0653.9
NC_013961:2370994:2374189237418923751931005Erwinia amylovora, complete genomeNucleoid-associated protein ndpA2e-0653.9
NC_012917:1840172:1882018188201818830251008Pectobacterium carotovorum subsp. carotovorum PC1, complete genome37kDa nucleoid-associated protein2e-0653.9