Pre_GI: BLASTP Hits

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Query: NC_003888:56225:87907 Streptomyces coelicolor A3(2), complete genome

Start: 87907, End: 88632, Length: 726

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016114:7252500:726315672631567263881726Streptomyces flavogriseus ATCC 33331 chromosome, complete genomeendo-1,4-beta-xylanase4e-101367
NC_007333:1411050:1414945141494514159611017Thermobifida fusca YX, complete genomeendo-1,4-beta-xylanase1e-70266
NC_015690:3477573:347862134786213479256636Paenibacillus mucilaginosus KNP414 chromosome, complete genomeXynA25e-57221
NC_000964:2049899:205380920538092054450642Bacillus subtilis subsp. subtilis str. 168, complete genomeendo-1,4-beta-xylanase7e-57220
NC_019896:1989997:201045020104502011091642Bacillus subtilis subsp. subtilis str. BSP1 chromosome, completeEndo-1,4-xylanase2e-56219
NC_016641:2735054:274746227474622748100639Paenibacillus terrae HPL-003 chromosome, complete genomeendo-1,4-beta-xylanase2e-56219
NC_017195:2027430:203987520398752040516642Bacillus subtilis subsp. subtilis str. RO-NN-1 chromosome, completeendo-1,4-beta-xylanase A4e-56218
NC_014976:170683:179093179093179734642Bacillus subtilis BSn5 chromosome, complete genomeendo-1,4-beta-xylanase4e-56218
NC_016047:2150000:216254121625412163182642Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completeendo-1,4-beta-xylanase A3e-56218
NC_014622:4922977:492909449290944929732639Paenibacillus polymyxa SC2 chromosome, complete genomeendo-1,4-beta-xylanase1e-55216
NC_014479:1831404:184911018491101849808699Bacillus subtilis subsp. spizizenii str. W23 chromosome, completeendo-1,4-beta-xylanase3e-49195
NC_016047:1978312:199554919955491996256708Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completeendo-1,4-beta-xylanase A5e-49194
NC_017188:1567000:159028215902821590980699Bacillus amyloliquefaciens TA208 chromosome, complete genomeprotein XynA4e-49194
NC_017190:1832402:185180418518041852502699Bacillus amyloliquefaciens LL3 chromosome, complete genomeendo-1,4-beta-xylanase4e-49194
NC_017191:1568369:159158615915861592284699Bacillus amyloliquefaciens XH7 chromosome, complete genomeglycoside hydrolase4e-49194
NC_014551:1872000:189460118946011895347747Bacillus amyloliquefaciens DSM 7, complete genomeXynA3e-49194
NC_011898:874457:876246876246877142897Clostridium cellulolyticum H10, complete genomeglycoside hydrolase family 111e-42172
NC_016627:2799453:2801372280137228037592388Clostridium clariflavum DSM 19732 chromosome, complete genomebeta-1,4-xylanase3e-35148
NC_015177:2972701:300046030004603001287828Pedobacter saltans DSM 12145 chromosome, complete genomeEndo-1,4-beta-xylanase3e-32138
NC_013410:2691437:271318327131832714166984Fibrobacter succinogenes subsp. succinogenes S85 chromosome,endo-1,4-beta-xylanase9e-1787
NC_014924:1762995:178333017833301784172843Pseudoxanthomonas suwonensis 11-1 chromosome, complete genomeglycoside hydrolase family 119e-1373.9
NC_013410:3017983:3017983301798330190861104Fibrobacter succinogenes subsp. succinogenes S85 chromosome,endo-1,4-beta-xylanase3e-1168.9