Pre_GI Gene

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Host: NC_013410 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_013410:3017983 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
301798330190861104endo-14-beta-xylanaseQuickGO ontologyBLASTP
30190353019748714hypothetical proteinBLASTP
30197673020264498hypothetical protein
30203133020780468hypothetical protein
30207823021471690hypothetical proteinBLASTP
30214713021848378transcriptional regulator XRE familyQuickGO ontologyBLASTP
302246430251122649type II restriction enzyme methylase subunitQuickGO ontologyBLASTP
302511830270551938DEADDEAH box helicaseQuickGO ontologyBLASTP
302703630282321197helicase A859LQuickGO ontologyBLASTP
30284923029436945hypothetical proteinBLASTP
302958230310391458inosine-5-monophosphate dehydrogenaseQuickGO ontologyBLASTP
303118130322091029hypothetical proteinBLASTP
30322493032998750hypothetical protein
303310830345261419glutamyl-tRNAGln amidotransferase subunit AQuickGO ontologyBLASTP
30345263034852327hypothetical protein
303490430360251122cation diffusion facilitator family transporterQuickGO ontologyBLASTP
30361463036823678uracil-DNA glycosylaseQuickGO ontologyBLASTP
30368533037002150hypothetical protein
303694530382791335hypothetical proteinBLASTP
303840830399161509arabinogalactan endo-14-beta-galactosidaseQuickGO ontologyBLASTP