Pre_GI: BLASTP Hits

Some Help

Query: NC_003888:3893187:3908520 Streptomyces coelicolor A3(2), complete genome

Start: 3908520, End: 3910139, Length: 1620

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016109:3963189:3988205398820539898091605Kitasatospora setae KM-6054, complete genomeputative peptidase S33 family protein2e-152539
NC_013510:5115500:5141765514176551432851521Thermomonospora curvata DSM 43183, complete genomeTAP domain protein4e-119428
NC_013131:9711508:9719481971948197210941614Catenulispora acidiphila DSM 44928, complete genomeTAP domain protein1e-105384
NC_007333:3244572:3260839326083932623411503Thermobifida fusca YX, complete genomeputative proteinase3e-99362
NC_021064:2001786:2018588201858820202851698Propionibacterium avidum 44067, complete genomehydrolase, alpha/beta domain protein7e-80298
NC_008595:2215244:2248060224806022496221563Mycobacterium avium 104, complete genomehydrolase, alpha/beta fold family protein, putative2e-75283
NC_017955:3670670:3672292367229236738661575Modestobacter marinus, complete genomealpha/beta hydrolase2e-71270
NC_013947:6585847:6618628661862866200581431Stackebrandtia nassauensis DSM 44728 chromosome, complete genomeTAP domain-containing protein1e-62241
NC_013729:4871430:4876429487642948779941566Kribbella flavida DSM 17836, complete genomeTAP domain protein6e-59229
NC_016114:7282882:7319313731931373209351623Streptomyces flavogriseus ATCC 33331 chromosome, complete genomeTAP domain-containing protein1e-57224
NC_013929:1119384:1134395113439511359781584Streptomyces scabiei 87.22 chromosome, complete genomeproteinase4e-56219
NC_019673:8161242:8166858816685881682461389Saccharothrix espanaensis DSM 44229 complete genomehypothetical protein5e-56219
NC_013729:863743:8653478653478668521506Kribbella flavida DSM 17836, complete genomeTAP domain protein5e-47189
NC_018750:6869675:6887597688759768891711575Streptomyces venezuelae ATCC 10712, complete genomeprobable exported protease2e-46187
NC_013947:460398:4814034814034829021500Stackebrandtia nassauensis DSM 44728 chromosome, complete genomeTAP domain-containing protein2e-46187
NC_016114:7282882:7324729732472973262371509Streptomyces flavogriseus ATCC 33331 chromosome, complete genomeTAP domain-containing protein5e-46186
NC_013947:3534209:3543958354395835455561599Stackebrandtia nassauensis DSM 44728 chromosome, complete genomeTAP domain-containing protein1e-44181
NC_011742:585908:6060496060496075331485Escherichia coli S88 chromosome, complete genomeexported protein; protease1e-35151
NC_013353:604719:6153406153406168241485Escherichia coli O103:H2 str. 12009, complete genomehydrolase7e-35149
AP010958:604719:6153406153406168241485Escherichia coli O103:H2 str. 12009 DNA, complete genomeputative hydrolase7e-35149
NC_013941:733286:7421147421147435981485Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeprotease encoded within prophage CP-933X2e-34147
NC_013361:649518:6591726591726606561485Escherichia coli O26:H11 str. 11368 chromosome, complete genomehydrolase2e-34147
NC_011415:644811:6555776555776570611485Escherichia coli SE11 chromosome, complete genomehypothetical protein2e-34147
NC_008563:1505405:1515889151588915173731485Escherichia coli APEC O1, complete genomehypothetical protein5e-33142
NC_016111:5369414:5384814538481453862891476Streptomyces cattleya NRRL 8057, complete genomehypothetical protein2e-31137
NC_012704:2296500:2318109231810923199801872Corynebacterium kroppenstedtii DSM 44385, complete genomeputative secreted protein5e-25116
NC_014814:3364336:3383682338368233852171536Mycobacterium sp. Spyr1 chromosome, complete genomealpha/beta hydrolase family protein3e-1687.4
NC_009523:341347:3413473413473433592013Roseiflexus sp. RS-1 chromosome, complete genomeTAP domain-containing protein2e-1378.2
NC_013729:6217500:6217624621762462189881365Kribbella flavida DSM 17836, complete genomealpha/beta hydrolase fold protein5e-1376.6
NC_014246:1730000:1740364174036417416411278Mobiluncus curtisii ATCC 43063 chromosome, complete genomeprolyl aminopeptidase9e-0755.8