Pre_GI: BLASTP Hits

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Query: NC_003888:3602753:3610876 Streptomyces coelicolor A3(2), complete genome

Start: 3610876, End: 3612171, Length: 1296

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013131:6329438:6349938634993863513321395Catenulispora acidiphila DSM 44928, complete genomeAAA ATPase9e-94344
NC_007333:430000:4427574427574438391083Thermobifida fusca YX, complete genomeATPase5e-53208
NC_016609:6750111:6761634676163467629591326Niastella koreensis GR20-10 chromosome, complete genomeATPase7e-22105
NC_011566:4709672:4712298471229847135991302Shewanella piezotolerans WP3, complete genomeATPase3e-1790.1
NC_010556:316996:3392073392073405201314Exiguobacterium sibiricum 255-15, complete genomeAAA ATPase4e-1789.7
NC_015675:5607297:5623994562399456253641371Mesorhizobium opportunistum WSM2075 chromosome, complete genomeAAA ATPase8e-1788.6
NC_003047:536151:5553595553595566901332Sinorhizobium meliloti 1021, complete genomehypothetical protein1e-1688.2
NC_008782:3167440:3196206319620631974261221Acidovorax sp. JS42, complete genomeSMC domain protein2e-1584
NC_006513:3486558:3507571350757135088691299Azoarcus sp. EbN1, complete genomehypothetical ATP-binding protein3e-1583.6
NC_013410:3280039:3329681332968133309641284Fibrobacter succinogenes subsp. succinogenes S85 chromosome,SMC domain-containing protein3e-1480.1
NC_015501:1200411:1218974121897412202331260Porphyromonas asaccharolytica DSM 20707 chromosome, completehypothetical protein1e-1378.2
NC_014616:169311:1903041903041917101407Bifidobacterium bifidum S17 chromosome, complete genomeRecF/RecN/SMC N terminal domain1e-1377.8
NC_015711:3122000:3126744312674431279821239Myxococcus fulvus HW-1 chromosome, complete genomeSMC domain-containing protein2e-1377.4
NC_007404:2743877:2759441275944127608771437Thiobacillus denitrificans ATCC 25259, complete genomehypothetical protein2e-1377
NC_016863:3905875:3911308391130839124981191Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1ATP-binding protein1e-1274.7
NC_016860:3964000:3972905397290539740951191Salmonella enterica subsp. enterica serovar Typhimurium strATP-binding protein1e-1274.7
NC_015663:1356982:1367997136799713696401644Enterobacter aerogenes KCTC 2190 chromosome, complete genomeSMC domain-containing protein2e-1273.9
NC_015675:5607297:5614345561434556156731329Mesorhizobium opportunistum WSM2075 chromosome, complete genomeATP-binding protein involved in virulence4e-1273.2
NC_006138:432000:4325504325504338331284Desulfotalea psychrophila LSv54, complete genomehypothetical protein9e-1272
NC_007333:430000:438981438981439244264Thermobifida fusca YX, complete genomeputative ATP-binding protein2e-1170.5
NC_016944:2588435:2596912259691225985341623Vibrio cholerae IEC224 chromosome I, complete sequencehypothetical protein3e-1170.1
NC_016445:2012294:2020771202077120223931623Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, completehypothetical protein3e-1170.1
NC_012668:1036000:1042430104243010440521623Vibrio cholerae MJ-1236 chromosome 1, complete sequenceATP binding protein3e-1170.1
NC_002505:2537655:2550614255061425522361623Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, completehypothetical protein3e-1170.1
NC_009457:2095366:210485621048562105467612Vibrio cholerae O395 chromosome 2, complete sequencehypothetical protein5e-1169.3
NC_008570:2216736:2243181224318122448511671Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomeRecF/RecN/SMC family protein5e-1169.3
NC_014837:33014:4381943819454621644Pantoea sp. At-9b chromosome, complete genomeSMC domain-containing protein6e-1168.9
NC_015381:1623587:1650399165039916517961398Burkholderia gladioli BSR3 chromosome 1, complete sequenceATP-binding protein1e-1067.8
NC_008576:4701930:3859385952231365Magnetococcus sp. MC-1, complete genomeATP binding protein4e-1066.2
NC_013194:3861409:3880836388083638823051470Candidatus Accumulibacter phosphatis clade IIA str. UW-1, completeSMC domain protein1e-0965.1
NC_008752:3684739:3712155371215537134681314Acidovorax avenae subsp. citrulli AAC00-1, complete genomeSMC domain protein2e-0963.9
NC_017068:2055500:2063556206355620648331278Selenomonas ruminantium subsp. lactilytica TAM6421, completeputative ATP binding protein6e-0962.4
NC_014394:3114648:3121149312114931230381890Gallionella capsiferriformans ES-2 chromosome, complete genomehypothetical protein8e-0858.9
NC_013037:1072266:1082487108248710842201734Dyadobacter fermentans DSM 18053, complete genomeSMC domain protein6e-0755.8