Pre_GI: BLASTP Hits

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Query: NC_003308:1:31704 Agrobacterium tumefaciens str. C58 plasmid Ti, complete sequence

Start: 31704, End: 33740, Length: 2037

Host Lineage: Agrobacterium tumefaciens; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Gram-negative soil bacterium. This is the most widely studied species in the genus. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003065:27163:6510765107671432037Agrobacterium tumefaciens str. C58 plasmid Ti, complete sequencehydantoin utilization protein A01315
NC_015458:2441435:2450530245053024525602031Pusillimonas sp. T7-7 chromosome, complete genomehydantoin utilization protein A8e-115414
NC_013412:33834:4121341213432612049Geobacillus sp. Y412MC61 plasmid pGYMC6101, complete sequence5-oxoprolinase (ATP-hydrolyzing)2e-104380
NC_014916:22644:3347133471355192049Geobacillus sp. Y412MC52 plasmid pGYMC5201, complete sequence5-oxoprolinase (ATP-hydrolyzing)2e-104380
NC_013524:1207845:1220987122098712230292043Sphaerobacter thermophilus DSM 20745 chromosome 2, complete genome5-oxoprolinase (ATP-hydrolyzing)8e-104378
NC_014831:1843835:1864369186436918664142046Thermaerobacter marianensis DSM 12885 chromosome, complete genome5-oxoprolinase (ATP-hydrolyzing)1e-102374
NC_014006:1862000:1885238188523818873042067Sphingobium japonicum UT26S chromosome 1, complete genomeN-methylhydantoinase A8e-100365
NC_000918:465627:4846484846484866301983Aquifex aeolicus VF5, complete genomeN-methylhydantoinase A1e-97358
NC_014299:218252:2399402399402419972058Halalkalicoccus jeotgali B3 plasmid 2, complete sequencehydantoin utilization protein3e-96353
NC_006510:2910000:2917596291759629196382043Geobacillus kaustophilus HTA426, complete genomeN-methylhydantoinase A2e-95350
NC_015966:1145974:1143986114398611459771992Rhodothermus marinus SG0.5JP17-172 chromosome, complete genome5-oxoprolinase2e-94347
NC_010676:2793237:2825086282508628271222037Burkholderia phytofirmans PsJN chromosome 2, complete sequence5-oxoprolinase (ATP-hydrolyzing)4e-94345
NC_012982:1569426:1579771157977115818222052Hirschia baltica ATCC 49814, complete genome5-oxoprolinase (ATP-hydrolyzing)6e-94345
NC_007181:1856455:1856455185645518584972043Sulfolobus acidocaldarius DSM 639, complete genomehydantoin utilization protein3e-92340
NC_006322:1932847:1934221193422119363262106Bacillus licheniformis ATCC 14580, complete genomehypothetical protein7e-92338
NC_012440:1405879:1409220140922014111931974Persephonella marina EX-H1, complete genomehydantoin utilization protein A (ORF2)1e-91337
NC_013923:363500:3656163656163676402025Natrialba magadii ATCC 43099 plasmid pNMAG01, complete sequence5-oxoprolinase (ATP-hydrolyzing)3e-91336
NC_017273:352150:3656763656763677482073Thermus thermophilus SG0.5JP17-16 plasmid pTHTHE1601, complete5-oxoprolinase4e-91336
NC_021171:2019755:2023698202369820258212124Bacillus sp. 1NLA3E, complete genome5-oxoprolinase6e-91335
NC_014032:269844:2755412755412775802040Salinibacter ruber M8 chromosome, complete genome5-oxoprolinase9e-89328
NC_011144:2674242:2686203268620326882542052Phenylobacterium zucineum HLK1, complete genomeN-methylhydantoinase A/acetone carboxylase, beta subunit8e-89328
NC_006395:161455:1614551614551634491995Haloarcula marismortui ATCC 43049 plasmid pNG700, completeN-methylhydaintoinase A2e-88327
NC_013947:5546315:5546315554631555483572043Stackebrandtia nassauensis DSM 44728 chromosome, complete genome5-oxoprolinase (ATP-hydrolyzing)3e-88326
NC_008541:4066294:4091224409122440932542031Arthrobacter sp. FB24 chromosome 1, complete sequence5-oxoprolinase (ATP-hydrolyzing)8e-88325
NC_008148:1711679:1719600171960017216542055Rubrobacter xylanophilus DSM 9941, complete genome5-oxoprolinase (ATP-hydrolyzing)1e-87324
NC_014298:310964:3155473155473175742028Halalkalicoccus jeotgali B3 plasmid 1, complete sequence5-oxoprolinase (ATP-hydrolyzing)2e-86320
NC_011420:3822765:3843516384351638455972082Rhodospirillum centenum SW, complete genomehydantoin utilization protein A2e-86320
NC_018532:166468:1664681664681684982031Arthrobacter sp. Rue61a plasmid p232, complete sequenceN-methylhydantoinase A / oxoprolinase HyuA4e-86319
NC_015944:10500:3254632546345401995Haloarcula hispanica ATCC 33960 plasmid pHH400, complete sequenceN-methylhydaintoinase A6e-86318
NC_007677:241846:2466272466272487292103Salinibacter ruber DSM 13855, complete genome5-oxoprolinase8e-86318
NC_011144:2770842:2783406278340627854872082Phenylobacterium zucineum HLK1, complete genome5-oxoprolinase (ATP-hydrolyzing)3e-85317
NC_014006:1365207:1374496137449613765442049Sphingobium japonicum UT26S chromosome 1, complete genomeN-methylhydantoinase A2e-85317
NC_010511:5169338:5169338516933851714162079Methylobacterium sp. 4-46 chromosome, complete genome5-oxoprolinase2e-85317
NC_008314:2744553:2755733275573327594613729Ralstonia eutropha H16 chromosome 2, complete sequenceHydantoinase/oxoprolinase containing both A and B domains9e-84311
NC_008009:2430509:2441590244159024437132124Acidobacteria bacterium Ellin345, complete genome5-oxoprolinase (ATP-hydrolyzing)4e-83309
NC_015591:1161007:1174329117432911763892061Sinorhizobium meliloti AK83 chromosome 3, complete sequence5-oxoprolinase6e-82305
NC_021184:3940910:3949825394982539518762052Desulfotomaculum gibsoniae DSM 7213, complete genomeN-methylhydantoinase A/acetone carboxylase, beta subunit8e-82305
NC_006677:215466:2332802332802353702091Gluconobacter oxydans 621H, complete genomeN-methylhydantoinase A2e-80300
NC_011901:342777:3630233630233649811959Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, complete5-oxoprolinase6e-79295
NC_018691:198909:2239262239262259171992Alcanivorax dieselolei B5 chromosome, complete genomeN-methylhydantoinase A6e-78292
NC_010525:421769:4217694217694237181950Thermoproteus neutrophilus V24Sta, complete genome5-oxoprolinase (ATP-hydrolyzing)4e-77289
NC_015312:1220500:1225422122542212274582037Pseudonocardia dioxanivorans CB1190 chromosome, complete genome5-oxoprolinase2e-75284
NC_007953:1088933:1099369109936911014232055Burkholderia xenovorans LB400 chromosome 3, complete sequence5-oxoprolinase (ATP-hydrolyzing)5e-73276
NC_018000:1914945:1928376192837619304062031Sinorhizobium fredii USDA 257 chromosome, complete genomehydantoin utilization protein A1e-72275
NC_012589:783704:7915657915657934991935Sulfolobus islandicus L.S.2.15, complete genome5-oxoprolinase (ATP-hydrolyzing)2e-70267
NC_002754:1811500:1823352182335218252861935Sulfolobus solfataricus P2, complete genomeN-methyl hydantoinase A (huyA-2)2e-70267
NC_020453:1025891:1037569103756910396322064Agromonas oligotrophica S58 DNA, complete genomehypothetical protein4e-70266
NC_012623:1691759:1700342170034217022761935Sulfolobus islandicus Y.N.15.51 chromosome, complete genome5-oxoprolinase4e-70266
NC_003911:1791878:1804224180422418063232100Silicibacter pomeroyi DSS-3, complete genomehydantoin utilization protein, putative9e-69261
NC_021184:3912805:3927975392797539300892115Desulfotomaculum gibsoniae DSM 7213, complete genomeN-methylhydantoinase A/acetone carboxylase, beta subunit2e-67257
NC_009440:1045882:1056935105693510588601926Metallosphaera sedula DSM 5348 chromosome, complete genome5-oxoprolinase3e-63243
NC_002754:2667322:2678727267872726806791953Sulfolobus solfataricus P2, complete genomeN-methylhydantoinase A (hyuA-3)6e-63242
NC_006513:1379735:1416685141668514188832199Azoarcus sp. EbN1, complete genomepossible subunit of acetophenone carboxylase4e-62239
NC_013769:2335062:2351763235176323537061944Sulfolobus islandicus L.D.8.5 chromosome, complete genome5-oxoprolinase2e-60234
NC_012589:2351811:2368690236869023706331944Sulfolobus islandicus L.S.2.15, complete genome5-oxoprolinase (ATP-hydrolyzing)2e-60234
NC_008148:1859888:1871896187189618740762181Rubrobacter xylanophilus DSM 9941, complete genome5-oxoprolinase (ATP-hydrolyzing)2e-59231
NC_007955:2281070:2285245228524522888653621Methanococcoides burtonii DSM 6242, complete genome5-oxoprolinase (ATP-hydrolyzing)4e-57223
NC_014253:933261:9355389355389392003663Methanohalobium evestigatum Z-7303 chromosome, complete genome5-oxoprolinase2e-54214
NC_015976:2064387:2066413206641320685422130Sphingobium sp. SYK-6, complete genomeputative hydantoinase A2e-52207
NC_018876:1551155:1563576156357615672233648Methanolobus psychrophilus R15 chromosome, complete genome5-oxoprolinase (ATP-hydrolyzing)2e-50201
NC_010170:1152131:1173353117335311749931641Bordetella petrii, complete genomeN-methylhydantoinase A1e-50201
NC_015676:1736375:1736375173637517400193645Methanosalsum zhilinae DSM 4017 chromosome, complete genome5-oxoprolinase1e-49198
NC_014098:1114076:1126183112618311283302148Bacillus tusciae DSM 2912 chromosome, complete genomeHydantoinase/oxoprolinase1e-49198
NC_014034:1418681:1437099143709914392522154Rhodobacter capsulatus SB1003 chromosome, complete genomeacetone carboxylase subunit beta6e-49196
NC_021171:2697398:2705804270580427079422139Bacillus sp. 1NLA3E, complete genome5-oxoprolinase7e-49196
NC_009937:3324793:3340114334011433422672154Azorhizobium caulinodans ORS 571, complete genomeacetone carboxylase beta subunit9e-48192
NC_015703:4417342:4434480443448044382203741Runella slithyformis DSM 19594 chromosome, complete genome5-oxoprolinase5e-46186
NC_017277:3083494:3083494308349430872523759Synechocystis sp. PCC 6803, complete genomehypothetical protein1e-45185
NC_017052:3073713:3082494308249430862523759Synechocystis sp. PCC 6803 substr. PCC-N, complete genomehypothetical protein1e-45185
NC_017039:3073724:3082505308250530862633759Synechocystis sp. PCC 6803 substr. PCC-P, complete genomehypothetical protein1e-45185
NC_000911:3075896:3084677308467730884353759Synechocystis sp. PCC 6803, complete genomehypothetical protein1e-45185
NC_007516:1439537:1467036146703614706833648Synechococcus sp. CC9605, complete genome5-oxoprolinase (ATP-hydrolyzing)1e-41171
NC_010625:670482:6988556988557009992145Burkholderia phymatum STM815 plasmid pBPHY01, complete sequence5-oxoprolinase (ATP-hydrolyzing)8e-41169
NC_008148:1859888:1874433187443318763761944Rubrobacter xylanophilus DSM 9941, complete genomeHydantoinase/oxoprolinase1e-39165
NC_007513:1311957:1311957131195713156523696Synechococcus sp. CC9902, complete genome5-oxoprolinase (ATP-hydrolyzing)2e-38160
NC_008820:1766973:1768617176861717722913675Prochlorococcus marinus str. MIT 9303, complete genomeHydantoinase/oxoprolinase:Hydantoinase B/oxoprolinase3e-37157
NC_006513:1379735:1419297141929714212731977Azoarcus sp. EbN1, complete genomepossible subunit of acetophenone carboxylase3e-35150
NC_013741:1196997:1203117120311712046701554Archaeoglobus profundus DSM 5631, complete genomeHydantoinase/oxoprolinase7e-35149
NC_008319:1950889:1970118197011819738223705Synechococcus sp. CC9311, complete genomeHydantoinase/oxoprolinase:Hydantoinase B/oxoprolinase8e-26119
NC_013385:1007616:1012904101290410145981695Ammonifex degensii KC4, complete genomeHydantoinase/oxoprolinase7e-21102
NC_015520:330500:3391223391223411372016Mahella australiensis 50-1 BON chromosome, complete genomeHydantoinase/oxoprolinase5e-20100
NC_011768:3854455:3852782385278238544581677Desulfatibacillum alkenivorans AK-01, complete genomeHydantoinase/oxoprolinase4e-1997.1
NC_014831:2224733:2225910222591022274811572Thermaerobacter marianensis DSM 12885 chromosome, complete genomeHydantoinase/oxoprolinase1e-1895.1
NC_003901:1268995:1268995126899512709231929Methanosarcina mazei Go1, complete genomehypothetical protein5e-1893.6
NC_015312:3290887:3292655329265532942111557Pseudonocardia dioxanivorans CB1190 chromosome, complete genomeHydantoinase/oxoprolinase5e-1893.2
NC_014328:3066628:3084372308437230859221551Clostridium ljungdahlii ATCC 49587 chromosome, complete genomehydantoinase8e-1892.8
NC_002973:505978:5083555083555099051551Listeria monocytogenes str. 4b F2365, complete genomehydantoinase/oxoprolinase family protein1e-1792
NC_010321:2207364:2226396222639622279461551Thermoanaerobacter pseudethanolicus ATCC 33223 chromosome, completehydantoinase/oxoprolinase2e-1791.3
NC_013921:80856:8763687636891861551Thermoanaerobacter italicus Ab9 chromosome, complete genomeHydantoinase/oxoprolinase2e-1791.3
NC_014964:2199252:2213539221353922150891551Thermoanaerobacter brockii subsp. finnii Ako-1 chromosome, completeHydantoinase/oxoprolinase2e-1791.3
NC_014209:136152:1372721372721388221551Thermoanaerobacter mathranii subsp. mathranii str. A3 chromosome,Hydantoinase/oxoprolinase2e-1688.6
NC_011420:3822765:3838645383864538402161572Rhodospirillum centenum SW, complete genomeHydantoinase2e-1688.2
NC_014657:914071:9361999361999378391641Caldicellulosiruptor owensensis OL chromosome, complete genomehydantoinase/oxoprolinase2e-1687.8
NC_015577:3244857:3247579324757932496872109Treponema azotonutricium ZAS-9 chromosome, complete genomedihydropyrimidinase3e-1687.8
NC_009954:1893206:1903039190303919046101572Caldivirga maquilingensis IC-167, complete genomeHydantoinase/oxoprolinase4e-1583.6
NC_019977:1649546:1661713166171316637642052Methanomethylovorans hollandica DSM 15978, complete genomeN-methylhydantoinase A/acetone carboxylase, beta subunit5e-1583.2
NC_008010:36978:4176441764438482085Deinococcus geothermalis DSM 11300 plasmid 1, complete sequenceHydantoinase/oxoprolinase9e-1582.8
NC_019977:1245894:1245894124589412478761983Methanomethylovorans hollandica DSM 15978, complete genomeN-methylhydantoinase A/acetone carboxylase, beta subunit8e-1582.8
NC_007955:1198994:1218906121890612208431938Methanococcoides burtonii DSM 6242, complete genomeHydantoinase/oxoprolinase7e-1582.8
NC_014002:1469653:1477029147702914789571929Methanohalophilus mahii DSM 5219 chromosome, complete genomeHydantoinase/oxoprolinase4e-1480.5
NC_003552:1008475:1016347101634710182991953Methanosarcina acetivorans C2A, complete genomehydantoinase6e-1479.7
NC_013169:2351475:2372186237218623737331548Kytococcus sedentarius DSM 20547, complete genomeN-methylhydantoinase A/acetone carboxylase, beta subunit1e-1275.5
NC_010001:851671:8530538530538551792127Clostridium phytofermentans ISDg, complete genomeHydantoinase/oxoprolinase4e-1170.9
NC_019903:2578966:2586250258625025882471998Desulfitobacterium dichloroeliminans LMG P-21439 chromosome,N-methylhydantoinase A/acetone carboxylase subunit beta2e-0965.1