Pre_GI: BLASTP Hits

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Query: NC_003308:1:28273 Agrobacterium tumefaciens str. C58 plasmid Ti, complete sequence

Start: 28273, End: 29691, Length: 1419

Host Lineage: Agrobacterium tumefaciens; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Gram-negative soil bacterium. This is the most widely studied species in the genus. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003065:27163:6167661676630941419Agrobacterium tumefaciens str. C58 plasmid Ti, complete sequencenopaline oxidase subunit A0912
NC_007948:4558000:4578122457812245795131392Polaromonas sp. JS666, complete genomeBFD-like (2Fe-2S)-binding region4e-100365
NC_010676:2793237:2820879282087928222941416Burkholderia phytofirmans PsJN chromosome 2, complete sequenceBFD domain protein (2Fe-2S)-binding domain protein7e-84311
NC_011144:2674242:2692785269278526941431359Phenylobacterium zucineum HLK1, complete genomesarcosine oxidase, subunit alpha6e-81301
NC_007948:4646344:4660047466004746614231377Polaromonas sp. JS666, complete genomeBFD-like (2Fe-2S)-binding region6e-76285
NC_011982:206784:2261742261742275681395Agrobacterium vitis S4 plasmid pTiS4, complete sequenceD-nopaline dehydrogenase7e-68258
NC_015136:2282488:2324124232412423255151392Burkholderia sp. CCGE1001 chromosome 1, complete sequenceFAD-dependent pyridine nucleotide-disulfide oxidoreductase2e-65250
NC_003037:1245645:1245645124564512470211377Sinorhizobium meliloti 1021 plasmid pSymA, complete sequenceputative opine oxidase subunit1e-62241
NC_011883:2031222:2031523203152320329111389Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774,BFD domain protein (2Fe-2S)-binding domain protein2e-61237
NC_015724:339500:3523083523083537681461Cupriavidus necator N-1 plasmid BB2p, complete sequenceopine oxidase subunit A5e-56218
NC_007948:4646344:4671121467112146726051485Polaromonas sp. JS666, complete genomeBFD-like (2Fe-2S)-binding region1e-55217
NC_007948:4620661:4641535464153546429561422Polaromonas sp. JS666, complete genomeBFD-like (2Fe-2S)-binding region8e-53208
NC_007005:2686551:2709105270910527104961392Pseudomonas syringae pv. syringae B728a, complete genomeFAD-dependent pyridine nucleotide-disulphide oxidoreductase:BFD-like [2Fe-2S]-binding region1e-43177
NC_005773:5684000:5705088570508857064971410Pseudomonas syringae pv. phaseolicola 1448A, complete genomepyridine nucleotide-disulphide oxidoreductase family protein6e-38159
NC_008391:2404443:2417162241716224186071446Burkholderia cepacia AMMD chromosome 2, complete sequenceBFD domain protein (2Fe-2S)-binding domain protein3e-36153
NC_012792:310443:3104433104433133972955Variovorax paradoxus S110 chromosome 2, complete genomeFAD dependent oxidoreductase5e-33142
NC_008027:5842740:5845435584543558468291395Pseudomonas entomophila L48, complete genomehydrogene cyanide synthase HcnB7e-31135
NC_014815:4621552:4648390464839046497751386Micromonospora sp. L5 chromosome, complete genomebfd domain protein (2fe-2S)-binding domain protein4e-30132
NC_007492:3954345:3994946399494639963551410Pseudomonas fluorescens PfO-1, complete genomeBFD-like (2Fe-2S)-binding region2e-29130
NC_012483:3731542:3797136379713637984281293Acidobacterium capsulatum ATCC 51196, complete genomepyridine nucleotide-disulfide oxidoreductase6e-29129
NC_020829:809457:8094578094578107041248Pseudomonas denitrificans ATCC 13867, complete genomeFAD-dependent pyridine nucleotide-disulfide oxidoreductase3e-27123
NC_013947:4363250:4378871437887143803761506Stackebrandtia nassauensis DSM 44728 chromosome, complete genomeBFD domain-containing protein (2Fe-2S)-binding domain-containing protein7e-24112
NC_015566:1941407:1942781194278119440431263Serratia sp. AS12 chromosome, complete genomeFAD-dependent pyridine nucleotide-disulfide oxidoreductase3e-23110
NC_020064:1854589:1855942185594218572011260Serratia marcescens FGI94, complete genomeNAD(FAD)-dependent dehydrogenase1e-20101
NC_003413:1666520:1667150166715016685741425Pyrococcus furiosus DSM 3638, complete genomesarcosine oxidase subunit alpha1e-1895.1
NC_021184:2936244:2946110294611029477021593Desulfotomaculum gibsoniae DSM 7213, complete genomethioredoxin reductase8e-1788.6
NC_000868:318434:3190643190643205091446Pyrococcus abyssi GE5, complete genomesarcosine oxidase, subunit alpha4e-1686.3
NC_020291:5409587:5420695542069554222721578Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeFAD-dependent pyridine nucleotide-disulfide oxidoreductase9e-1685.1
NC_015474:301428:3014283014283028641437Pyrococcus sp. NA2 chromosome, complete genomesarcosine oxidase, subunit alpha2e-1584
NC_014364:3001597:3025981302598130276391659Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeFAD-dependent pyridine nucleotide-disulfide oxidoreductase3e-1583.6
NC_015737:2691246:2691246269124626928201575Clostridium sp. SY8519, complete genomeNAD-dependent dehydrogenase1e-1481.3
NC_013926:71186:8670186701881371437Aciduliprofundum boonei T469 chromosome, complete genomeFAD-dependent pyridine nucleotide-disulfide oxidoreductase1e-1378.2
NC_000961:1532245:1532245153224515336931449Pyrococcus horikoshii OT3, complete genomeD-nopaline dehydrogenase5e-1376.3
NC_015172:1075592:1106628110662811077281101Syntrophobotulus glycolicus DSM 8271 chromosome, complete genomeFAD-dependent pyridine nucleotide-disulfide oxidoreductase8e-1375.5
NC_009952:2217877:2243321224332122463233003Dinoroseobacter shibae DFL 12, complete genomesarcosine oxidase subunit alpha7e-1168.9
NC_013522:991649:1014925101492510160161092Thermanaerovibrio acidaminovorans DSM 6589, complete genomeFAD-dependent pyridine nucleotide-disulphide oxidoreductase2e-1067.4
NC_015559:2745570:2760284276028427632022919Marinomonas posidonica IVIA-Po-181 chromosome, complete genomeglycine cleavage T protein (aminomethyl transferase)3e-1067
NC_016641:2773757:2786959278695927881821224Paenibacillus terrae HPL-003 chromosome, complete genomehypothetical protein4e-1066.6
NC_021184:2936244:294547029454702945820351Desulfotomaculum gibsoniae DSM 7213, complete genomeNAD(P)H-nitrite reductase2e-0964.7
NC_002928:3781657:3786393378639337893322940Bordetella parapertussis 12822, complete genomesarcosine oxidase alpha subunit1e-0862
NC_000868:269923:2780912780912793141224Pyrococcus abyssi GE5, complete genomeprobable monooxygenase1e-0861.2
NC_003047:74986:97908979081008712964Sinorhizobium meliloti 1021, complete genomePUTATIVE SARCOSINE OXIDASE ALPHA SUBUNIT TRANSMEMBRANE PROTEIN1e-0758.5
NC_006624:1208464:1213039121303912142801242Thermococcus kodakarensis KOD1, complete genomeNADH oxidase3e-0757
NC_013522:991649:101408410140841014410327Thermanaerovibrio acidaminovorans DSM 6589, complete genomeBFD domain protein (2Fe-2S)-binding domain protein4e-0756.6
NC_020291:5409587:542035454203545420683330Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeNAD(P)H-nitrite reductase5e-0756.2
NC_014624:828943:8339188339188351651248Eubacterium limosum KIST612 chromosome, complete genomeputative NAD(FAD)-dependent dehydrogenase9e-0755.5
NC_007952:1587500:1604122160412216071243003Burkholderia xenovorans LB400 chromosome 2, complete sequenceSarcosine oxidase, alpha subunit, heterotetrameric1e-0655.1
NC_012225:2247796:2255279225527922565531275Brachyspira hyodysenteriae WA1, complete genomepyridine nucleotide-disulphide oxidoreductase2e-0654.3
NC_014364:3001597:302571530257153025984270Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeBFD domain protein (2Fe-2S)-binding domain protein4e-0653.1
NC_015425:2528549:2543822254382225450811260Clostridium botulinum BKT015925 chromosome, complete genomepyridine nucleotide-disulfide oxidoreductase4e-0653.1
NC_009328:3322802:333193233319323332267336Geobacillus thermodenitrificans NG80-2 chromosome, complete genomehypothetical protein5e-0652.8
NC_015172:1075592:110586111058611106631771Syntrophobotulus glycolicus DSM 8271 chromosome, complete genomeBFD domain protein (2Fe-2S)-binding domain protein8e-0652.4
NC_014624:1675500:1725071172507117263151245Eubacterium limosum KIST612 chromosome, complete genomeputative NAD(FAD)-dependent dehydrogenase8e-0652