Pre_GI: BLASTP Hits

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Query: NC_003306:22228:22228 Agrobacterium tumefaciens str. C58 plasmid AT, complete sequence

Start: 22228, End: 24126, Length: 1899

Host Lineage: Agrobacterium tumefaciens; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Gram-negative soil bacterium. This is the most widely studied species in the genus. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003064:22535:2253522535244331899Agrobacterium tumefaciens str. C58 plasmid AT, complete sequencehypothetical protein01285
NC_010322:5349000:5382289538228953841601872Pseudomonas putida GB-1 chromosome, complete genomeKAP P-loop domain-containing protein7e-147521
NC_007086:2887875:2956010295601029578631854Xanthomonas campestris pv. campestris str. 8004, complete genomehypothetical protein1e-140500
NC_007973:2348481:2365944236594423678121869Ralstonia metallidurans CH34 chromosome 1, complete sequenceKAP P-loop4e-105382
NC_010515:2111691:2133783213378321356691887Burkholderia cenocepacia MC0-3 chromosome 2, complete sequenceKAP P-loop domain protein9e-102371
NC_008061:190287:2107852107852126711887Burkholderia cenocepacia AU 1054 chromosome 2, complete sequenceKAP P-loop9e-102371
NC_020181:5130513:5147323514732351492001878Enterobacter aerogenes EA1509E, complete genomePhage T7 exclusion protein4e-94345
NC_011283:1178500:1189580118958011914571878Klebsiella pneumoniae 342 chromosome, complete genomeKAP family P-loop domain-containing protein2e-93343
NC_010510:409469:4094694094694112441776Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01, completeKAP P-loop domain protein2e-92340
NC_013716:5201097:5258800525880052605841785Citrobacter rodentium ICC168, complete genomeputative P-loop ATPase family protein3e-92339
NC_004431:4270305:4299658429965843014421785Escherichia coli CFT073, complete genomehypothetical protein1e-91337
NC_011742:4655373:4662209466220946639931785Escherichia coli S88 chromosome, complete genomehypothetical protein4e-91336
NC_008563:4739333:4747547474754747493311785Escherichia coli APEC O1, complete genomeputative KAP family P-loop domain containing protein4e-91336
NC_009792:3245368:3269805326980532715801776Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein6e-90332
NC_008347:2515921:2523066252306625248711806Maricaulis maris MCS10, complete genomeKAP P-loop domain protein1e-82308
NC_015410:3093465:3135543313554331375071965Pseudomonas mendocina NK-01 chromosome, complete genomekap P-loop domain-containing protein8e-64245
NC_013194:1040197:1048741104874110506871947Candidatus Accumulibacter phosphatis clade IIA str. UW-1, completeKAP P-loop domain protein7e-63242
NC_011662:1017933:1026772102677210287151944Thauera sp. MZ1T, complete genomeKAP P-loop domain protein2e-62240
NC_010337:98974:1103791103791122981920Heliobacterium modesticaldum Ice1, complete genomekap p-loop8e-60232
NC_006582:4256915:4267499426749942693251827Bacillus clausii KSM-K16, complete genomehypothetical protein9e-59228
NC_010162:8528116:8536406853640685383011896Sorangium cellulosum 'So ce 56', complete genomeP-loop ATPase7e-55215
NC_009338:3029507:3046061304606130480762016Mycobacterium gilvum PYR-GCK chromosome, complete genomeKAP P-loop domain-containing protein9e-42172
NC_020133:2421965:2433646243364624353731728Mycobacterium liflandii 128FXT, complete genomeP-loop ATPase8e-31135
NC_008611:3579500:3587912358791235895371626Mycobacterium ulcerans Agy99, complete genomeP-loop ATPase3e-28127
NC_019673:2051363:2100891210089121026631773Saccharothrix espanaensis DSM 44229 complete genomehypothetical protein2e-1584.7
NC_014370:885937:9085059085059109282424Prevotella melaninogenica ATCC 25845 chromosome chromosome I,KAP family P-loop domain protein2e-0964.7
NC_007952:3196085:3208056320805632104192364Burkholderia xenovorans LB400 chromosome 2, complete sequencehypothetical protein3e-0964.3
NC_007912:4579873:4590155459015545926472493Saccharophagus degradans 2-40, complete genomePutative oxygen-independent coproporphyrinogen III oxidase1e-0862.4
NC_015556:515641:5255045255045268591356Pseudomonas fulva 12-X chromosome, complete genomeKAP P-loop domain protein1e-0862
NC_012997:817553:8348548348548381113258Teredinibacter turnerae T7901, complete genomeKAP family P-loop domain protein8e-0756.2
NC_017986:5867782:5871609587160958738822274Pseudomonas putida ND6 chromosome, complete genomehypothetical protein9e-0755.8