Pre_GI: BLASTP Hits

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Query: NC_003305:693810:693810 Agrobacterium tumefaciens str. C58 chromosome linear, complete

Start: 693810, End: 694919, Length: 1110

Host Lineage: Agrobacterium tumefaciens; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Gram-negative soil bacterium. This is the most widely studied species in the genus. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_020126:8885518:8893680889368088946991020Myxococcus stipitatus DSM 14675, complete genomehypothetical protein1e-33144
NC_011742:258746:2665672665672676131047Escherichia coli S88 chromosome, complete genomehypothetical protein2e-33143
NC_007946:258747:2665682665682676141047Escherichia coli UTI89, complete genomehypothetical protein2e-33143
NC_008253:257059:2658932658932669391047Escherichia coli 536, complete genomehypothetical protein2e-33143
NC_008563:258725:2665462665462675921047Escherichia coli APEC O1, complete genomehypothetical protein2e-33143
NC_007517:306508:3246483246483256611014Geobacter metallireducens GS-15, complete genomehypothetical protein6e-32138
NC_010505:1205747:1220821122082112218911071Methylobacterium radiotolerans JCM 2831, complete genomehypothetical protein6e-32138
NC_008095:2420066:2429216242921624302411026Myxococcus xanthus DK 1622, complete genomehypothetical protein5e-32138
NC_011000:2732330:2767560276756027689031344Burkholderia cenocepacia J2315 chromosome 1, complete sequencehypothetical protein2e-30133
NC_007645:4423507:4426652442665244277101059Hahella chejuensis KCTC 2396, complete genomehypothetical protein1e-29131
NC_008390:1293823:1306349130634913076921344Burkholderia cepacia AMMD chromosome 1, complete sequencehypothetical protein6e-29128
NC_012724:2547500:2562742256274225638301089Burkholderia glumae BGR1 chromosome 1, complete genomehypothetical protein1e-27124
NC_020126:3479500:3490233349023334913511119Myxococcus stipitatus DSM 14675, complete genomehypothetical protein5e-27122
NC_012997:1689583:169285516928551693835981Teredinibacter turnerae T7901, complete genomehypothetical protein3e-27122
NC_020126:2216926:222437322243732225359987Myxococcus stipitatus DSM 14675, complete genomehypothetical protein9e-26118
NC_008095:8698766:8706371870637187074411071Myxococcus xanthus DK 1622, complete genomehypothetical protein1e-24114
NC_015711:8169752:8202933820293382039431011Myxococcus fulvus HW-1 chromosome, complete genomehypothetical protein1e-24114
NC_008095:6323456:6340896634089663419061011Myxococcus xanthus DK 1622, complete genomehypothetical protein5e-24112
NC_007645:7136956:7181889718188971829531065Hahella chejuensis KCTC 2396, complete genomehypothetical protein4e-24112
NC_015711:2542051:2553421255342125544581038Myxococcus fulvus HW-1 chromosome, complete genomehypothetical protein3e-24112
NC_014355:1865003:1905481190548119066051125Candidatus Nitrospira defluvii, complete genomehypothetical protein1e-23111
NC_008095:2146693:2146693214669321476971005Myxococcus xanthus DK 1622, complete genomehypothetical protein4e-23109
NC_020126:8512908:8523174852317485242561083Myxococcus stipitatus DSM 14675, complete genomehypothetical protein2e-22107
NC_014311:2385666:2388399238839923895321134Ralstonia solanacearum PSI07 chromosome, complete genomehypothetical protein1e-21104
NC_020126:7451894:7460985746098574619951011Myxococcus stipitatus DSM 14675, complete genomehypothetical protein8e-22104
NC_015711:2008578:2014036201403620150791044Myxococcus fulvus HW-1 chromosome, complete genomehypothetical protein4e-21102
NC_018000:2964500:2987872298787229889721101Sinorhizobium fredii USDA 257 chromosome, complete genomehypothetical protein3e-1996.3
NC_011000:1397611:1408618140861814099101293Burkholderia cenocepacia J2315 chromosome 1, complete sequencehypothetical protein5e-1995.5
NC_015761:2982000:2989900298990029909221023Salmonella bongori NCTC 12419, complete genomehypothetical protein8e-1891.7
NC_007645:5801295:5817602581760258186181017Hahella chejuensis KCTC 2396, complete genomehypothetical protein1e-1790.9
NC_013716:2139952:217370221737022174670969Citrobacter rodentium ICC168, complete genomehypothetical protein3e-1790.1
NC_011989:2795811:2804630280463028056461017Agrobacterium vitis S4 chromosome 1, complete sequencehypothetical protein3e-1790.1
NC_013892:1272448:1290182129018212913991218Xenorhabdus bovienii SS-2004 chromosome, complete genomehypothetical protein8e-1788.2
NC_013892:1272448:1280765128076512819821218Xenorhabdus bovienii SS-2004 chromosome, complete genomehypothetical protein2e-1686.7
NC_014228:2883500:2904924290492429061411218Xenorhabdus nematophila ATCC 19061, complete genomehypothetical protein3e-1686.3
NC_014228:1336466:1346134134613413472521119Xenorhabdus nematophila ATCC 19061, complete genomehypothetical protein4e-1686.3
NC_010170:1661915:1672533167253316751692637Bordetella petrii, complete genomeputative secreted protein1e-1378.2
NC_008752:2334511:2342326234232623436421317Acidovorax avenae subsp. citrulli AAC00-1, complete genomehypothetical protein3e-1376.3
NC_010002:4256651:4266195426619542675111317Delftia acidovorans SPH-1, complete genomehypothetical protein2e-1273.9
NC_015563:3309097:3328747332874733300631317Delftia sp. Cs1-4 chromosome, complete genomehypothetical protein2e-1273.9
NC_008752:3828438:384852538485253849517993Acidovorax avenae subsp. citrulli AAC00-1, complete genomehypothetical protein2e-1273.6
NC_015138:3809732:382940938294093830401993Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completehypothetical protein4e-1272.4
NC_010625:670482:690959690959691537579Burkholderia phymatum STM815 plasmid pBPHY01, complete sequencehypothetical protein3e-0756.6
NC_016816:1852659:1852659185265918551992541Pantoea ananatis LMG 5342, complete genomehypothetical protein4e-0756.2
NC_014914:1678973:2100210047062607Taylorella equigenitalis MCE9 chromosome, complete genomehypothetical protein7e-0755.5
NC_015138:4246787:4248091424809142492421152Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completehypothetical protein1e-0654.7
NC_016043:1043366:1060123106012310627292607Taylorella asinigenitalis MCE3 chromosome, complete genomehypothetical protein4e-0652.8
NC_020064:4751097:4755751475575147582912541Serratia marcescens FGI94, complete genomeuncharacterized low-complexity protein7e-0652
NC_008752:3007073:3008449300844930096001152Acidovorax avenae subsp. citrulli AAC00-1, complete genomehypothetical protein1e-0551.6