Pre_GI: BLASTP Hits

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Query: NC_003305:1:2248 Agrobacterium tumefaciens str. C58 chromosome linear, complete

Start: 2248, End: 2469, Length: 222

Host Lineage: Agrobacterium tumefaciens; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Gram-negative soil bacterium. This is the most widely studied species in the genus. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015976:1064888:108418210841821084601420Sphingobium sp. SYK-6, complete genomeputative transposase for insertion sequence element1e-1788.6
NC_002678:4859111:487275848727584873120363Mesorhizobium loti MAFF303099, complete genometransposase6e-1785.9
NC_002678:5714000:572108757210875721449363Mesorhizobium loti MAFF303099, complete genometransposase6e-1785.9
NC_002678:4859111:487641748764174876740324Mesorhizobium loti MAFF303099, complete genometransposase4e-1683.6
NC_007406:2615916:263486626348662635231366Nitrobacter winogradskyi Nb-255, complete genomeISBm1, transposase orfA1e-1478.2
NC_009720:251703:256999256999257397399Xanthobacter autotrophicus Py2, complete genomeISBm1, transposase orfA2e-1477.8
NC_009720:2945655:296614429661442966542399Xanthobacter autotrophicus Py2, complete genomeISBm1, transposase orfA2e-1477.8
NC_013119:511500:524456524456525067612Brucella microti CCM 4915 chromosome 1, complete sequenceISBm1, transposase orfA3e-1477.4
NC_015857:531314:544631544631545242612Brucella pinnipedialis B2/94 chromosome chromosome 1, completeISBm1, transposase orfA4e-1477
NC_010742:529500:542452542452542880429Brucella abortus S19 chromosome 1, complete sequenceISBm1, transposase orfA5e-1476.6
NC_007618:526400:540431540431540859429Brucella melitensis biovar Abortus 2308 chromosome I, completeISBm1, transposase orfA5e-1476.6
NC_009505:531000:544127544127544555429Brucella ovis ATCC 25840 chromosome I, complete sequenceISBm1, transposase orfA4e-1476.6
NC_009505:531000:549549549549549977429Brucella ovis ATCC 25840 chromosome I, complete sequenceISBm1, transposase orfA4e-1476.6
NC_006932:531000:544136544136544857722Brucella abortus biovar 1 str. 9-941 chromosome I, completeISBm1, transposase orfA4e-1476.6
NC_010103:507482:526691526691527119429Brucella canis ATCC 23365 chromosome I, complete sequencehypothetical protein4e-1476.6
NC_004310:508483:528047528047528475429Brucella suis 1330 chromosome I, complete sequenceISBm1, transposase orfA4e-1476.6
NC_010103:507482:521157521157521585429Brucella canis ATCC 23365 chromosome I, complete sequencehypothetical protein4e-1476.6
NC_004310:508483:522514522514522942429Brucella suis 1330 chromosome I, complete sequenceISBm1, transposase orfA4e-1476.6
NC_016797:508414:522445522445522873429Brucella suis VBI22 chromosome I, complete sequenceISBm1, transposase orfA4e-1476.6
NC_016797:508414:527978527978528406429Brucella suis VBI22 chromosome I, complete sequenceISBm1, transposase orfA4e-1476.6
NC_017251:508469:522500522500522928429Brucella suis 1330 chromosome I, complete genomeISBm1, transposase orfA4e-1476.6
NC_017251:508469:528033528033528461429Brucella suis 1330 chromosome I, complete genomeISBm1, transposase orfA4e-1476.6
NC_014819:25765:328143281433577764Asticcacaulis excentricus CB 48 plasmid pASTEX02, completehypothetical protein5e-1476.3
NC_003317:1443874:145472314547231454998276Brucella melitensis 16M chromosome I, complete sequenceTRANSPOSASE9e-1475.5
NC_003317:1443874:146025514602551460530276Brucella melitensis 16M chromosome I, complete sequenceTRANSPOSASE9e-1475.5
NC_010169:527500:546035546035546463429Brucella suis ATCC 23445 chromosome I, complete sequencehypothetical protein2e-1374.7
NC_010169:527500:540502540502540930429Brucella suis ATCC 23445 chromosome I, complete sequencehypothetical protein2e-1374.7
NC_010581:2999002:301960030196003020454855Beijerinckia indica subsp. indica ATCC 9039, complete genome5e-1373.2
NC_009485:3579323:359763735976373597951315Bradyrhizobium sp. BTAi1 chromosome, complete genometransposase4e-1373.2
NC_009485:584707:599693599693600007315Bradyrhizobium sp. BTAi1 chromosome, complete genometransposase4e-1373.2
NC_017248:529500:548147548147548626480Brucella melitensis NI chromosome chromosome I, complete sequencetransposase-like protein6e-1372.8
NC_012441:529500:548152548152548580429Brucella melitensis ATCC 23457 chromosome I, complete sequenceISBm1 transposase orfA7e-1372.8
NC_015857:531314:550295550295550774480Brucella pinnipedialis B2/94 chromosome chromosome 1, completeISBm1, transposase orfA7e-1372.4
NC_007618:526400:545961545961546389429Brucella melitensis biovar Abortus 2308 chromosome I, completeISBm1, transposase orfA8e-1372.4
NC_006932:531000:549666549666550429764Brucella abortus biovar 1 str. 9-941 chromosome I, completetransposase orfA4e-1270.1
NC_013119:511500:530171530171530599429Brucella microti CCM 4915 chromosome 1, complete sequenceISBm1, transposase orfA4e-1270.1
NC_010725:4035397:403667440366744037431758Methylobacterium populi BJ001, complete genomeTransposase and inactivated derivatives-like protein9e-1268.9
NC_015730:3693391:370171137017113701983273Roseobacter litoralis Och 149 chromosome, complete genome8e-1062.4
NC_009485:1648896:166607216660721666443372Bradyrhizobium sp. BTAi1 chromosome, complete genometransposase1e-0962
NC_014032:269844:269844269844270233390Salinibacter ruber M8 chromosome, complete genometransposase2e-0857.8
NC_013595:235931:242177242177242596420Streptosporangium roseum DSM 43021, complete genomeputative transposase2e-0754.7
NC_017986:1885613:189460218946021894970369Pseudomonas putida ND6 chromosome, complete genomeISPs1, transposase OrfA2e-0754.7
NC_017986:1885613:189909918990991899467369Pseudomonas putida ND6 chromosome, complete genomeISPs1, transposase OrfA2e-0754.7
NC_010322:5349000:538651853865185386886369Pseudomonas putida GB-1 chromosome, complete genomeISPs1, transposase OrfA2e-0754.7
NC_010322:5349000:539218753921875392555369Pseudomonas putida GB-1 chromosome, complete genomeISPs1, transposase OrfA2e-0754.7
NC_010660:175200:198186198186198635450Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequenceputative transposase2e-0754.3
NC_014221:3175013:318648831864883187348861Truepera radiovictrix DSM 17093 chromosome, complete genome4e-0753.5
NC_013421:1954915:195914319591431959364222Pectobacterium wasabiae WPP163, complete genome4e-0753.5
NC_004578:4869673:488036148803614880729369Pseudomonas syringae pv. tomato str. DC3000, complete genomeISPs1, transposase OrfA5e-0753.1
NC_004851:157675:160401160401160850450Shigella flexneri 2a str. 301 plasmid pCP301, complete sequenceISSfl1 ORF11e-0652
NC_012987:32296:554705547055808339Methylobacterium extorquens DM4 plasmid p1METDI, complete sequence1e-0652
NC_006677:1596560:160972516097251610126402Gluconobacter oxydans 621H, complete genomeTransposase1e-0652
NC_014221:1786122:180974818097481810607860Truepera radiovictrix DSM 17093 chromosome, complete genomeTransposase-like protein2e-0651.6
NC_010501:2609567:261825326182532618633381Pseudomonas putida W619, complete genomeISPs1, transposase OrfA1e-0651.6
NC_010510:388885:407336407336407701366Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01, completeputative transposase1e-0651.6
NC_010995:404574:408981408981409427447Cellvibrio japonicus Ueda107, complete genomeIS5 family transposase, orfA1e-0651.6
NC_016582:1639375:164957216495721649988417Streptomyces bingchenggensis BCW-1 chromosome, complete genomehypothetical protein2e-0651.2
NC_015857:531314:534835534835535653819Brucella pinnipedialis B2/94 chromosome chromosome 1, completetransposase3e-0650.8
NC_013119:511500:515504515504516322819Brucella microti CCM 4915 chromosome 1, complete sequencetransposase3e-0650.8
NC_016797:508414:513308513308514126819Brucella suis VBI22 chromosome I, complete sequencetransposase3e-0650.8
NC_017251:508469:513363513363514181819Brucella suis 1330 chromosome I, complete genometransposase3e-0650.8
NC_010103:507482:512018512018512836819Brucella canis ATCC 23365 chromosome I, complete sequencetransposase for insertion sequence element IS65013e-0650.8
NC_016027:2047954:208201520820152082362348Gluconacetobacter xylinus NBRC 3288, complete genometransposase2e-0650.8
NC_017082:3687638:369729136972913697641351Bradyrhizobium sp. S23321, complete genomeputative insertion element (IS) transposase3e-0650.4
NC_010169:527500:531367531367532185819Brucella suis ATCC 23445 chromosome I, complete sequencetransposase for insertion sequence element IS65013e-0650.4
NC_004310:508483:513377513377513797421Brucella suis 1330 chromosome I, complete sequence3e-0650.4
NC_010742:529500:546370546370546738369Brucella abortus S19 chromosome 1, complete sequenceIS5 family element, transposase orfA5e-0650.1
NC_006932:531000:548054548054548422369Brucella abortus biovar 1 str. 9-941 chromosome I, completetransposase orfA IS5 family element5e-0650.1
NC_003317:1443874:145624414562441456612369Brucella melitensis 16M chromosome I, complete sequenceTRANSPOSASE5e-0650.1
NC_010169:527500:544421544421544789369Brucella suis ATCC 23445 chromosome I, complete sequencehypothetical protein5e-0650.1
NC_015857:531314:548733548733549101369Brucella pinnipedialis B2/94 chromosome chromosome 1, completeIS5 family transposase orfA5e-0650.1
NC_007618:526400:544349544349544717369Brucella melitensis biovar Abortus 2308 chromosome I, completeIS5 family element, transposase orfA5e-0650.1
NC_004310:508483:526433526433526801369Brucella suis 1330 chromosome I, complete sequenceIS5 family element, transposase orfA5e-0650.1
NC_009505:531000:547936547936548304369Brucella ovis ATCC 25840 chromosome I, complete sequenceIS5 family transposase orfA5e-0650.1
NC_012441:529500:546539546539546907369Brucella melitensis ATCC 23457 chromosome I, complete sequencetransposase orfA IS5 family protein5e-0650.1
NC_014819:25765:319663196632720755Asticcacaulis excentricus CB 48 plasmid pASTEX02, complete4e-0650.1
NC_010742:529500:533315533315534133819Brucella abortus S19 chromosome 1, complete sequenceTransposase4e-0650.1
NC_012441:529500:533487533487534305819Brucella melitensis ATCC 23457 chromosome I, complete sequencetransposase and inactivated derivatives-like protein4e-0650.1
NC_017251:508469:526419526419526787369Brucella suis 1330 chromosome I, complete genomeIS5 family transposase orfA5e-0650.1
NC_017248:529500:546585546585546953369Brucella melitensis NI chromosome chromosome I, complete sequencetransposase orfA IS5 family element5e-0650.1
NC_016797:508414:526364526364526732369Brucella suis VBI22 chromosome I, complete sequenceIS5 family transposase orfA5e-0650.1
NC_013119:511500:528558528558528926369Brucella microti CCM 4915 chromosome 1, complete sequenceIS5 family element, transposase orfA5e-0650.1
NC_016027:123853:144557144557144904348Gluconacetobacter xylinus NBRC 3288, complete genometransposase8e-0649.3
NC_016027:1851737:186940818694081869755348Gluconacetobacter xylinus NBRC 3288, complete genometransposase7e-0649.3
NC_016027:1902854:192105019210501921397348Gluconacetobacter xylinus NBRC 3288, complete genometransposase7e-0649.3
NC_016027:1357659:139704813970481397395348Gluconacetobacter xylinus NBRC 3288, complete genometransposase7e-0649.3
NC_016027:1357659:137069813706981371045348Gluconacetobacter xylinus NBRC 3288, complete genometransposase7e-0649.3
NC_016027:123853:136279136279136626348Gluconacetobacter xylinus NBRC 3288, complete genometransposase7e-0649.3
NC_016027:1902854:193257019325701932917348Gluconacetobacter xylinus NBRC 3288, complete genometransposase7e-0649.3
NC_016027:1357659:136845213684521368799348Gluconacetobacter xylinus NBRC 3288, complete genometransposase7e-0649.3
NC_009937:4392108:440207644020764402534459Azorhizobium caulinodans ORS 571, complete genomeputative transposase6e-0649.3
NC_008148:2498000:252970325297032530080378Rubrobacter xylanophilus DSM 9941, complete genomeputative transposase9e-0648.9