Pre_GI: BLASTP Hits

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Query: NC_003304:51048:62606 Agrobacterium tumefaciens str. C58 chromosome circular, complete

Start: 62606, End: 62728, Length: 123

Host Lineage: Agrobacterium tumefaciens; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Gram-negative soil bacterium. This is the most widely studied species in the genus. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003305:1035342:104767010476701047792123Agrobacterium tumefaciens str. C58 chromosome linear, completeSSU 5S ribosomal RNA5e-1476.3
NC_003305:1297785:131006313100631310185123Agrobacterium tumefaciens str. C58 chromosome linear, completeSSU 5S ribosomal RNA2e-1373.9
NC_008254:3246306:325178832517883251902115Mesorhizobium sp. BNC1, complete genome23S ribosomal RNA1e-1065.5
NC_008254:2728693:273427627342762734390115Mesorhizobium sp. BNC1, complete genome5S ribosomal RNA1e-1065.5
NC_004310:1777721:178965017896501789775126Brucella suis 1330 chromosome I, complete sequence5S ribosomal RNA1e-1065.1
NC_004310:1578918:158458815845881584713126Brucella suis 1330 chromosome I, complete sequence5S ribosomal RNA1e-1065.1
NC_015857:1609670:161534116153411615467127Brucella pinnipedialis B2/94 chromosome chromosome 1, complete5S ribosomal RNA1e-1065.1
NC_015857:1809500:182041018204101820536127Brucella pinnipedialis B2/94 chromosome chromosome 1, complete5S ribosomal RNA1e-1065.1
NC_015858:1150446:115767911576791157805127Brucella pinnipedialis B2/94 chromosome chromosome 2, complete5S ribosomal RNA1e-1065.1
NC_013118:1109610:111708711170871117213127Brucella microti CCM 4915 chromosome 2, complete genome5S ribosomal RNA1e-1065.1
NC_003318:183914:195136195136195254119Brucella melitensis 16M chromosome II, complete sequence5S ribosomal RNA4e-1063.5
NC_003317:392271:403647403647403765119Brucella melitensis 16M chromosome I, complete sequence5S Ribosomal RNA4e-1063.5
NC_003317:190975:204021204021204139119Brucella melitensis 16M chromosome I, complete sequence5S Ribosomal RNA4e-1063.5
NC_015675:1721543:174141017414101741524115Mesorhizobium opportunistum WSM2075 chromosome, complete genome5S ribosomal RNA5e-0960.1
NC_014923:1680095:169215316921531692267115Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, complete5S ribosomal RNA5e-0960.1
NC_015675:1721543:173365117336511733765115Mesorhizobium opportunistum WSM2075 chromosome, complete genome5S ribosomal RNA5e-0960.1
NC_014923:1680095:170002517000251700139115Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, complete5S ribosomal RNA5e-0960.1
NC_008380:58232:694326943269551120Rhizobium leguminosarum bv. viciae 3841, complete genome5S ribosomal RNA6e-0959.7
NC_008380:4532969:454051245405124540631120Rhizobium leguminosarum bv. viciae 3841, complete genome5S ribosomal RNA6e-0959.7
NC_008380:4078670:408543240854324085551120Rhizobium leguminosarum bv. viciae 3841, complete genome5S ribosomal RNA6e-0959.7
NC_003047:74986:874858748587604120Sinorhizobium meliloti 1021, complete genomeribosomal RNA-5S8e-0959.3
NC_012587:3613162:362657136265713626690120Rhizobium sp. NGR234, complete genome5S ribosomal RNA8e-0959.3
NC_003047:2798367:280565028056502805769120Sinorhizobium meliloti 1021, complete genomeribosomal RNA-5S8e-0959.3
NC_012587:2744731:275227227522722752391120Rhizobium sp. NGR234, complete genome5S ribosomal RNA8e-0959.3
NC_012587:3177583:318335831833583183477120Rhizobium sp. NGR234, complete genome5S ribosomal RNA8e-0959.3
NC_003047:3202125:320850432085043208623120Sinorhizobium meliloti 1021, complete genomeribosomal RNA-5S8e-0959.3
NC_008343:2589680:259552425955242595645122Granulibacter bethesdensis CGDNIH1, complete genome5S RNA5e-0856.6
NC_008343:2020785:202611320261132026234122Granulibacter bethesdensis CGDNIH1, complete genome5S RNA5e-0856.6
NC_008343:823093:835878835878835999122Granulibacter bethesdensis CGDNIH1, complete genome5S RNA5e-0856.6
NC_012985:846202:859242859242859356115Candidatus Liberibacter asiaticus str. psy62, complete genome5S ribosomal RNA1e-0652
NC_012985:779279:791202791202791316115Candidatus Liberibacter asiaticus str. psy62, complete genome5S ribosomal RNA1e-0652
NC_012985:410307:413257413257413371115Candidatus Liberibacter asiaticus str. psy62, complete genome5S ribosomal RNA1e-0652
NC_014774:605085:619284619284619398115Candidatus Liberibacter solanacearum CLso-ZC1 chromosome, complete5S ribosomal RNA1e-0652
NC_014313:3617910:362986136298613629975115Hyphomicrobium denitrificans ATCC 51888 chromosome, complete5S ribosomal RNA2e-0651.6
NC_007778:4814000:482057048205704820684115Rhodopseudomonas palustris HaA2, complete genome5S ribosomal RNA3e-0650.8
NC_009937:673820:685690685690685809120Azorhizobium caulinodans ORS 571, complete genome5S ribosomal RNA4e-0650.1
NC_009937:4768500:477548747754874775606120Azorhizobium caulinodans ORS 571, complete genome5S ribosomal RNA4e-0650.1
NC_009937:5033152:504194950419495042068120Azorhizobium caulinodans ORS 571, complete genome5S ribosomal RNA4e-0650.1
NC_015186:2197236:228797922879792288100122Acidiphilium multivorum AIU301, complete genome5S ribosomal RNA6e-0649.7
NC_015186:2931000:294019829401982940318121Acidiphilium multivorum AIU301, complete genome5S ribosomal RNA6e-0649.7