Pre_GI: BLASTP Hits

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Query: NC_003198:3586000:3590722 Salmonella enterica subsp. enterica serovar Typhi str. CT18,

Start: 3590722, End: 3590797, Length: 76

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010468:4455201:44565004456500445657576Escherichia coli ATCC 8739, complete genometRNA-Thr2e-0651.6
NC_000913:4159090:41737774173777417385276Escherichia coli K12, complete genometRNA-Thr2e-0651.6
CU928160:4248621:42648994264899426497476Escherichia coli IAI1 chromosome, complete genometRNA-Thr2e-0651.6
NC_011750:4543135:45555994555599455567476Escherichia coli IAI39 chromosome, complete genometRNA-Thr2e-0651.6
NC_010473:4256000:42734734273473427354876Escherichia coli str. K-12 substr. DH10B, complete genometRNA-Thr2e-0651.6
NC_007946:3683371:36892843689284368935673Escherichia coli UTI89, complete genometRNA-Thr6e-0649.7
NC_006511:4119332:41340414134041413411373Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCtRNA-Thr6e-0649.7