Pre_GI: BLASTP Hits

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Query: NC_003063:304962:329125 Agrobacterium tumefaciens str. C58 chromosome linear, complete

Start: 329125, End: 329955, Length: 831

Host Lineage: Agrobacterium fabrum; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This strain is a biovar 1 nopaline-producing strain originally isolated from a cherry tree tumor. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003305:1743939:174486317448631745633771Agrobacterium tumefaciens str. C58 chromosome linear, completetranscriptional regulator, IclR family7e-124443
NC_010557:316000:327457327457328194738Burkholderia ambifaria MC40-6 chromosome 3, complete sequencetranscriptional regulator, IclR family7e-40164
NC_011894:2184956:218642921864292187250822Methylobacterium nodulans ORS 2060, complete genometranscriptional regulator, IclR family2e-26119
NC_007963:317291:334985334985335767783Chromohalobacter salexigens DSM 3043, complete genometranscriptional regulator, IclR family3e-25115
NC_018870:484000:489181489181489951771Thermacetogenium phaeum DSM 12270 chromosome, complete genomeHTH-type transcriptional regulator1e-1273.9
NC_015589:2447132:244890124489012449674774Desulfotomaculum ruminis DSM 2154 chromosome, complete genometranscriptional regulator IclR4e-1272
NC_019974:1184871:119823511982351198999765Natronococcus occultus SP4, complete genometranscriptional regulator3e-1169.3
NC_019978:2532640:254798025479802548762783Halobacteroides halobius DSM 5150, complete genometranscriptional regulator2e-1066.6
NC_007644:416000:418409418409419215807Moorella thermoacetica ATCC 39073, complete genometranscriptional regulator, IclR family1e-0963.9
NC_015577:2508027:253114025311402531940801Treponema azotonutricium ZAS-9 chromosome, complete genometranscriptional regulator2e-0962.8
NC_008593:640000:648290648290649051762Clostridium novyi NT, complete genometranscription regulator (IclR family) BH21373e-0962.4
NC_014299:82584:117884117884118654771Halalkalicoccus jeotgali B3 plasmid 2, complete sequenceArcR family transcription regulator9e-0960.8
NC_005139:518760:535254535254536063810Vibrio vulnificus YJ016 chromosome I, complete sequencetranscriptional regulator3e-0858.9
NC_019962:1750497:186400218640021864754753Natrinema pellirubrum DSM 15624, complete genometranscriptional regulator2e-0756.6
NC_008148:792610:805439805439806221783Rubrobacter xylanophilus DSM 9941, complete genometranscriptional regulator, IclR family2e-0756.6
NC_012880:2425330:243403424340342434825792Dickeya dadantii Ech703, complete genometranscriptional regulator, IclR family3e-0755.8
NC_014500:2589089:259686025968602597651792Dickeya dadantii 3937 chromosome, complete genomeDNA-binding transcriptional regulatory protein KdgR3e-0755.8
NC_011001:163813:181278181278182174897Burkholderia cenocepacia J2315 chromosome 2, complete sequencetranscriptional regulator KdgR5e-0755.5
NC_011830:4645453:465649246564924657265774Desulfitobacterium hafniense DCB-2, complete genometranscriptional regulator, IclR family5e-0755.5
NC_007644:362000:379800379800380564765Moorella thermoacetica ATCC 39073, complete genometranscriptional regulator, IclR family5e-0755.1
NC_014532:2298628:230572923057292306538810Halomonas elongata DSM 2581, complete genometranscriptional regulator KdgR7e-0754.7
NC_019974:3013338:301888230188823019688807Natronococcus occultus SP4, complete genometranscriptional regulator7e-0754.7
NC_003888:6853107:686865768686576869469813Streptomyces coelicolor A3(2), complete genometranscriptional regulator for glyoxylate bypass1e-0654.3
NC_010511:6756000:676853467685346769319786Methylobacterium sp. 4-46 chromosome, complete genomeIclR family transcriptional regulator3e-0652.8
NC_015732:684000:686748686748687509762Spirochaeta caldaria DSM 7334 chromosome, complete genomeIclR family transcriptional regulator5e-0652
NC_013510:5394432:540096854009685401714747Thermomonospora curvata DSM 43183, complete genometranscriptional regulator, IclR family5e-0652
NC_013744:462520:469728469728470492765Haloterrigena turkmenica DSM 5511 plasmid pHTUR01, completetranscriptional regulator, IclR family5e-0652
NC_008596:4152916:416604641660464166819774Mycobacterium smegmatis str. MC2 155, complete genomeputative IclR family protein transcriptional regulator4e-0652
NC_014974:1076565:109702010970201097802783Thermus scotoductus SA-01 chromosome, complete genomeIclR family transcriptional regulator6e-0651.6
NC_008726:4725389:473456147345614735364804Mycobacterium vanbaalenii PYR-1, complete genomeregulatory proteins, IclR6e-0651.6
NC_012912:2216749:223158522315852232376792Dickeya zeae Ech1591, complete genometranscriptional regulator, IclR family8e-0651.2
NC_013745:371322:372414372414373184771Haloterrigena turkmenica DSM 5511 plasmid pHTUR02, completetranscriptional regulator, IclR family9e-0650.8