Pre_GI: BLASTP Hits

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Query: NC_002971:211331:238408 Coxiella burnetii RSA 493, complete genome

Start: 238408, End: 239634, Length: 1227

Host Lineage: Coxiella burnetii; Coxiella; Coxiellaceae; Legionellales; Proteobacteria; Bacteria

General Information: Causes Q-fever. This organism is widely distributed in nature and can cause infections in reptiles, birds, and mammals. It causes Q fever, or 'query' fever, an atypical pneumonia first associated with abattoir workers in Australia. Transmission may be through insect vectors such as ticks that have bitten an infected wild or domesticated animal, or through an aerosol produced by domesticated animals such as sheep or cattle. The presence of a plasmid is believed to be associated with virulence and pathogenicity, however C. burnetii isolates containing plasmid QpDG are avirulent in guinea pigs and plasmidless isolates have been associated with endocarditis in humans. Coxiella burnetii has a developmental life cycle, and can grow vegetatively through binary fission, or asymmetrically and produce a spore-like cell. The spore-like cell may enable the organism to exist extracellularly for small amounts of time. This bacterium is an obligate intracellular pathogen. It is endocytosed by a host cell, a macrophage for example, and lives and replicates inside the phagolysozome, a unique property of this organism. The genome encodes proteins that have a higher than average pI, which may enable adaptation to the acidic environment of the phagolysozome. The chromosome also contains genes for a number of detoxification and stress response proteins such as dismutases that allow growth in the oxidative environment. The type IV system is similar to the one found in Legionella, which may be important for intracellular survival. This organism produces numerous ankyrin-repeat proteins that may be involved in interactions with the host cell. The genome has 83 pseudogenes, which may be a result of the typical genome-wide degradation observed with other intracellular organisms and also has a group I intron in the 23S ribosomal RNA gene.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011146:4196652:4198032419803241993391308Geobacter bemidjiensis Bem, complete genomeglucose/galactose transporter1e-78293
NC_013722:3117442:3135935313593531372631329Xanthomonas albilineans, complete genomeputative glucose/galactose transporter protein4e-65248
NC_008322:4000330:4010764401076440120021239Shewanella sp. MR-7, complete genomeglucose/galactose transporter6e-65248
NC_014924:3270547:3271601327160132729021302Pseudoxanthomonas suwonensis 11-1 chromosome, complete genomeglucose/galactose transporter2e-58226
NC_014933:3015678:3036956303695630381641209Bacteroides helcogenes P 36-108 chromosome, complete genomeL-fucose transporter2e-46186
NC_003912:472000:4912884912884925441257Campylobacter jejuni RM1221, complete genomeL-fucose permease4e-36152
NC_017281:433995:4532574532574545131257Campylobacter jejuni subsp. jejuni S3 chromosome, complete genomeL-fucose permease4e-36152
NC_017279:437665:4577824577824590381257Campylobacter jejuni subsp. jejuni IA3902 chromosome, completeL-fucose permease4e-36152
NC_015177:915366:9167389167389180571320Pedobacter saltans DSM 12145 chromosome, complete genomeglucose/galactose transporter1e-31137
NC_008309:1628939:1633660163366016349521293Haemophilus somnus 129PT, complete genomeL-fucose permease2e-30133
NC_013037:5395951:5413584541358454149061323Dyadobacter fermentans DSM 18053, complete genomeglucose/galactose transporter9e-30131
NC_013730:4440943:4445032444503244462731242Spirosoma linguale DSM 74, complete genomeglucose/galactose transporter1e-28127
NC_006677:1596560:1611853161185316130881236Gluconobacter oxydans 621H, complete genomeSugar permease1e-27124
NC_020209:1949500:1950553195055319518841332Pseudomonas poae RE*1-1-14, complete genomeL-fucose permease3e-27123
NC_021064:1789980:1799726179972618010571332Propionibacterium avidum 44067, complete genomeL-fucose transporter1e-23111
NC_014933:3856561:3867270386727038685291260Bacteroides helcogenes P 36-108 chromosome, complete genomemajor facilitator superfamily MFS_15e-23108
NC_011149:3895921:3916756391675639180721317Salmonella enterica subsp. enterica serovar Agona str. SL483,L-fucose:H+ symporter permease2e-21103
NC_011083:3985618:4006453400645340077691317Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,L-fucose:H+ symporter permease2e-21103
NC_011080:3941909:3962828396282839641441317Salmonella enterica subsp. enterica serovar Newport str. SL254,L-fucose:H+ symporter permease2e-21103
NC_003197:3971905:3992244399224439935601317Salmonella typhimurium LT2, complete genomeputative L-fucose permease2e-21103
NC_006511:3759550:3780454378045437817701317Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCprobable permease2e-21103
NC_003198:3855157:3855157385515738564731317Salmonella enterica subsp. enterica serovar Typhi str. CT18,probable permease2e-21103
NC_010102:3919999:3940417394041739417331317Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein3e-21103
NC_011094:3853036:3874035387403538753511317Salmonella enterica subsp. enterica serovar Schwarzengrund strL-fucose:H+ symporter permease2e-21103
NC_011147:3755725:3776133377613337774491317Salmonella enterica subsp. enterica serovar Paratyphi A strpermease2e-21103
NC_016810:3993863:4013556401355640148721317Salmonella enterica subsp. enterica serovar Typhimurium strpermease2e-21103
NC_016856:3985597:4005936400593640072521317Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative L-fucose permease2e-21103
NC_016857:3993864:4013557401355740148731317Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74permease2e-21103
NC_016860:4055117:4097355409735540986711317Salmonella enterica subsp. enterica serovar Typhimurium strL-fucose:H+ symporter permease2e-21103
NC_016863:3933848:3953543395354339548591317Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative L-fucose permease2e-21103
NC_017046:3991551:4012384401238440137001317Salmonella enterica subsp. enterica serovar Typhimurium str. 798permease2e-21103
NC_012125:3905782:3926702392670239280181317Salmonella enterica subsp. enterica serovar Paratyphi C strainpermease2e-21103
CP002797:4603787:4631766463176646330821317Escherichia coli NA114, complete genomePutative fucose/glucose/galactose permease2e-20100
NC_008253:3122148:3149090314909031504061317Escherichia coli 536, complete genomeputative L-fucose permease2e-20100
NC_004431:279868:3026793026793039951317Escherichia coli CFT073, complete genomePutative L-fucose permease1e-20100
NC_011745:333061:3403903403903417061317Escherichia coli ED1a chromosome, complete genomeputative L-fucose permease3e-2099.8
NC_011565:69427:8404184041853271287Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2,putative glucose/galactose transporter1e-1687.8
NC_013162:1015500:1015558101555810168501293Capnocytophaga ochracea DSM 7271, complete genomemajor facilitator superfamily MFS_11e-1584.3
NC_006347:3805500:3813656381365638148221167Bacteroides fragilis YCH46, complete genomeglucose/galactose transporter6e-1272.4
NC_010506:774455:7929327929327942091278Shewanella woodyi ATCC 51908, complete genomemajor facilitator superfamily MFS_11e-1068.2
NC_021182:4058873:4069005406900540701741170Clostridium pasteurianum BC1, complete genomefucose permease4e-0652.8